Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00009 ATGGATCCGGAAGCCCTCTCAGCAACTTTGTTCAAATGGGATCCTCGAGGAATGGTGGGGGGCGGCAGCGGTGCATCCCTCCCAGCACCACTACCCCCCTACTCGCTGCGCCCCAGGGAGTTGGGATTAGGAGGCCTGGAGGAGTTGTTCCAGGCTTACGGTATCAGGTACTACACCGCCGCTAAAATTGCGGAACTCGGATTCACCGTCAGCACCCTCCTGGACATGAAAGACGAAGAGTTGGAGGACATGATGAACAGCCTCTCTCACATTTTCCGTTGGGACCTTCTGGTGGGTGAGAGGTACGGAATTAAGGCTGCTATAAGAGCCGAGCGCAGACGTGTAGATGACGAAATCGACCCCTCCAGGCGCCGTCACCTCTTGTCCAACGACACCACCACCAACGTCGTCCTCGATGCCCTCTCTCAGGAAGGGCTTTCGGAGGAGCCGGTGCAGCAGGAGAAGGAGGTGGTGGGAAGCGGAGGCGGAGGAGGAGCGTGGGAGGCAGTTGCAGCAGCTGAGATGAGGAAGAAGCAGCGGAGGAGAAACGTATCGAAGAAGAAGCAGGTGATAGTGATGGAGGAGGATAATGACGAAACCGAGGGAGGTGGGGAGGAGGAGGAGAATATGGAAGTCAGCGAGAGACAGCGGGAGCATCCATTCATCGTAACCGAACCAGGGGAGGTTGCACGGGGAAAGAAGAACGGCCTCGACTATCTCTTCCACCTCTATGAGCAGTGTCGTCAATTTTTGATCCAGGTCCAGAACATTGCCAAGGAACGAGGAGAAAAATGCCCCAATAAGGTGACGAACCAGGTGTTTAGATACGCGAAGAAGGCGGGAGCAAGTTACATAAACAAGCCCAAAATGAGACACTACGTGCACTGCTATGCGCTGCATTGTCTGGACGAGGATGCGTCGAATTCATTGAGGAGGGTTTTCAAAGAAAGGGGCGAAAATGTGGGAGCTTGGCGACAGGCATGCTATAAGCCTCTGGTAGCCATAGCAGCTGCCCAAGGTTGGGACATCGATGCCATTTTCAACGCACATCCACGCCTCGCCATCTGGTACGTGCCTACCAAACTCCGCCAACTCTGCCACGCCGAGCGCAACAGTTCCACAGCCTCCACCTCCGCTGCCGCCGCTCACTTGCCTTTTTAA 1161 55.47 MDPEALSATLFKWDPRGMVGGGSGASLPAPLPPYSLRPRELGLGGLEELFQAYGIRYYTAAKIAELGFTVSTLLDMKDEELEDMMNSLSHIFRWDLLVGERYGIKAAIRAERRRVDDEIDPSRRRHLLSNDTTTNVVLDALSQEGLSEEPVQQEKEVVGSGGGGGAWEAVAAAEMRKKQRRRNVSKKKQVIVMEEDNDETEGGGEEEENMEVSERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCRQFLIQVQNIAKERGEKCPNKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEDASNSLRRVFKERGENVGAWRQACYKPLVAIAAAQGWDIDAIFNAHPRLAIWYVPTKLRQLCHAERNSSTASTSAAAAHLPF 386
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 30790 33412 + CmaCh10G000090.1 Cma10g00009 301325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00009 386 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 211 374 IPR035209 GO:0003677
Cma10g00009 386 Pfam Floricaula / Leafy protein SAM domain 43 118 IPR035079 -
Cma10g00009 386 PANTHER PROTEIN LEAFY 1 386 - -
Cma10g00009 386 Gene3D Protein LEAFY 212 380 IPR038276 -
Cma10g00009 386 PANTHER PROTEIN LEAFY 1 386 IPR002910 GO:0003677|GO:0006355
Cma10g00009 386 MobiDBLite consensus disorder prediction 195 215 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00009 Cma11g00003 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00009 Cma-Chr10:30790 Cma11g00003 Cma-Chr11:11395 7.71E-76 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35668 PF17538 C_LFY_FLO 6.00E-108 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00009 - - cmax:111484867 679.478