Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00010 ATGGATGGTGCAAAGTCAGTGACTCCCAAAAAACTTAAAGTGGATCCGAACCGAGGGAAGAGGCCCTTTTCTTCCGATGAATTGGAGGAAGAAAACCCGTTCCCGATCTACTCAGCTAGATCTCAACATGACACGTCGGCCATGGTTTCTGCGTTAGCTCAAGTGATAACGAGTGGGAGTGGGAGTGGGAGTAGCAGAAGCCCAGTAGAAGCAGATTACTGGCCGCAATCGCAGCAAGCAGCAGCAGATGAAGAACAAGGTGGTGGAAGCAGGACGGGGATGGTGTCAAGAGAGAGGCATTATCGAGGAGTAAGGCAGAGACCGTGGGGAAAATGGGCAGCTGAGATTCGTGATCCGAAAAAGGCAGCAAGAGTGTGGCTGGGCACCTTCGACACTGCTGAGGCTGCCGCACTTGCTTACGATGAAGCTGCCCACAGATTCAAAGGCACCAAAGCCAAGCTCAACTTCCCTGAGAGACTCACTACCCCATGCCCTCCGCCCCCCTATGCCTATCATCACCATCACAATAACCACAACCTATAG 543 52.49 MDGAKSVTPKKLKVDPNRGKRPFSSDELEEENPFPIYSARSQHDTSAMVSALAQVITSGSGSGSSRSPVEADYWPQSQQAAADEEQGGGSRTGMVSRERHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAAHRFKGTKAKLNFPERLTTPCPPPPYAYHHHHNNHNL 180
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 34680 35416 - CmaCh10G000100.1 Cma10g00010 301326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00010 180 Gene3D AP2/ERF domain 99 159 IPR036955 GO:0003700|GO:0006355
Cma10g00010 180 MobiDBLite consensus disorder prediction 56 104 - -
Cma10g00010 180 MobiDBLite consensus disorder prediction 56 85 - -
Cma10g00010 180 MobiDBLite consensus disorder prediction 1 43 - -
Cma10g00010 180 PRINTS Ethylene responsive element binding protein signature 123 139 IPR001471 GO:0003700|GO:0006355
Cma10g00010 180 PRINTS Ethylene responsive element binding protein signature 101 112 IPR001471 GO:0003700|GO:0006355
Cma10g00010 180 MobiDBLite consensus disorder prediction 1 28 - -
Cma10g00010 180 ProSiteProfiles AP2/ERF domain profile. 100 157 IPR001471 GO:0003700|GO:0006355
Cma10g00010 180 PANTHER DNA-BINDING DOMAIN 30 167 IPR044808 GO:0003700|GO:0009873
Cma10g00010 180 CDD AP2 100 158 IPR001471 GO:0003700|GO:0006355
Cma10g00010 180 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 30 167 - -
Cma10g00010 180 SUPERFAMILY DNA-binding domain 100 158 IPR016177 GO:0003677
Cma10g00010 180 SMART rav1_2 100 163 IPR001471 GO:0003700|GO:0006355
Cma10g00010 180 Pfam AP2 domain 100 149 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00010 Cma-Chr10:34680 Cma03g01060 Cma-Chr3:7310030 6.46E-32 dispersed
Cma10g00010 Cma-Chr10:34680 Cma08g00025 Cma-Chr8:139852 5.98E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35669 PF00847 AP2 9.10E-15 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00010 - - ini:109164738 175.252