Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00011 ATGGCACCCGGGAAACCATGCCTACTCTTCAGGAATAAGCCACAAAGAATAAGCCAAAAACCATGTCCCCACCAAGCATTACGGATTAGCATCTCCAGTTGGAGTTGGACTTTGCAAGCACCTACCCTCACCTCCTCAACTTTCGCCTCCTACTTTTGGGCAATGGGCAACTGCTTTTCCGACGACGCCGTTGGCCGCTCTGCCGCCGGTGCCACTCCCTTCTCCCAAAATAATACTTCCAACACCGCCGTAGATTGTTTCTTGTTGTCTCGGGGCTACCGTGGCCTCTATTCCCAGATCGAGCTCTCATTCTCTGCATCTAACTTGCGGGACCGTGATGTTTTCTCCCAGAGTGATCCCATGGTGGTAATCTACACAAAAGGAAGAGACGGAACACTAGAAGAGCTTGACCGCACAGAAGTAATTCAAAATTCATTAAACCCAAAATGGATCCATAAGCTAAAGATTACCTATCAATTTGAGGTTGTGCAAACTTTGGTGTTTTTTGTATATGACGTCGATACTCAATATCAAAATCTAGGAGTAAAGATGCTGAAGCTAGATGAACAGCAATATCTTGGTGAAGTAACTTGTGTACTATCTGAGATAGTGACCCAATCAGACAGGTCACTTACCTTGGATCTAGTTTATAGAGAAGAATCAACCAGCTCTACTCATACACACCACCGTGGAAAATTTACTGTTCATGCTGAGGAGTGTGTTAGCTCAAAGACCACCACAGAGATGATATTAAGGTGTTCAGACTTGGAACACAAGGATCTCTTCTCACGAATTGACCCTTTTCTGGTTATTTCAAAAACTGTTGAGAGTAAGAGCTCAATTCCAGTTTGCAAAACTGAAGTCATAAAGAATGATTTGAATCCCACATGGAAGCCCGTATTCTTGAATATGCAACAAGTTGGAAGCAAGGACAGCCCCTTAATAATAGAGTGTTACAACTTCAACAACAACGGGAAGCATGAATTGATTGGAAAAGTTCAAAAATCACTTGTGGAGTTGGAGAAGCTTTCTTTTAGTGGGGAGGGAGAAAATCTGTTCTTACTTCCTTCTGCTGGACATGATTACCATATCAAAGTATTGAAAAGCCAGCTATTTGTGGACAAATTCTCTGAGAGCGTTCAGCCAACGTTTCTTGATTACATAGCTGGTGGCTATGAAATGAACTTCATGGTGGCTGTTGATTTCACAGCTTCAAATGGAAATCCCCGCCTTCCTGATTCCTTGCATTTCATTGATCCTTCAGGACGGCCAAATTCATACCAGCGAGCAATCATAGAAGTTGGAGAGGTGTTGCAGTTTTATGACTCAGATAAACGCTTTCCTGCTTGGGGATTTGGAGCACGACCAATTGATGGTCCAGTATCTCATTGTTTCAACCTAAATGGAAGTAGTCACTACTGCGAGGTTGAAGGAACTCAAGGAATTTTGATGGCATATACAAGTGCGCTCCATAATGTATCTCTTGCAGGACCAACTCTTTTTGGGCCTGTGGTTAATAATGCTGCATTAATTGCCAGTCAGTCTCTCGCAAGTGGTGGGCGGAAGTACTTTGTTTTGCTCATAATCACTGATGGAGTGGTAACAGATCTCCAAGAAACTAAAGATGCTCTTGTGAAGGCATCTGATCTGCCATTGTCCATTCTCATTGTTGGAGTGGGTGGAGCTGACTTTAAAGAAATGGAGGTTTTAGATGCGGATAAGGGAGAGAGACTTGAAAGTACAACTGGACGTGTTGCCTCACGAGATATAGTCCAATTTGTTCCATTTCGGGATGTACAGGGTGGAGGGATTTCTGTTGTTCAAGAACTGCTAGCAGAAATACCTCATCAATTTCTGGCCTATATTCGAAGCAGAGATAACGGGCAGTTGTGCGATGTCGCACTGAGATTCAAGACTTTCGTTTGCAGTTCAGTGTGCATACCAATGCAGTGGGTATATCCGTTCAATGGTTGGCGTTTTTCCACGGGGACAGAAGTTTACGCGAGAGTGACTGTCGGCTTAGTTGTGCCAGGGACCTTTTTCCATTCTGGAGAATATGATAGTGAATATAGTGCTGAACCTCAGGACATGCCTGAATCCTAA 2103 43.65 MAPGKPCLLFRNKPQRISQKPCPHQALRISISSWSWTLQAPTLTSSTFASYFWAMGNCFSDDAVGRSAAGATPFSQNNTSNTAVDCFLLSRGYRGLYSQIELSFSASNLRDRDVFSQSDPMVVIYTKGRDGTLEELDRTEVIQNSLNPKWIHKLKITYQFEVVQTLVFFVYDVDTQYQNLGVKMLKLDEQQYLGEVTCVLSEIVTQSDRSLTLDLVYREESTSSTHTHHRGKFTVHAEECVSSKTTTEMILRCSDLEHKDLFSRIDPFLVISKTVESKSSIPVCKTEVIKNDLNPTWKPVFLNMQQVGSKDSPLIIECYNFNNNGKHELIGKVQKSLVELEKLSFSGEGENLFLLPSAGHDYHIKVLKSQLFVDKFSESVQPTFLDYIAGGYEMNFMVAVDFTASNGNPRLPDSLHFIDPSGRPNSYQRAIIEVGEVLQFYDSDKRFPAWGFGARPIDGPVSHCFNLNGSSHYCEVEGTQGILMAYTSALHNVSLAGPTLFGPVVNNAALIASQSLASGGRKYFVLLIITDGVVTDLQETKDALVKASDLPLSILIVGVGGADFKEMEVLDADKGERLESTTGRVASRDIVQFVPFRDVQGGGISVVQELLAEIPHQFLAYIRSRDNGQLCDVALRFKTFVCSSVCIPMQWVYPFNGWRFSTGTEVYARVTVGLVVPGTFFHSGEYDSEYSAEPQDMPES 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 35998 43608 - CmaCh10G000110.1 Cma10g00011 301327

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00011 700 CDD C2B_Copine 248 345 IPR037768 -
Cma10g00011 700 CDD vWA_copine_like 364 618 IPR010734 -
Cma10g00011 700 ProSiteProfiles VWFA domain profile. 395 614 IPR002035 -
Cma10g00011 700 SMART VWA_4 393 590 IPR002035 -
Cma10g00011 700 ProSiteProfiles C2 domain profile. 229 353 IPR000008 -
Cma10g00011 700 PANTHER COPINE 55 626 IPR045052 GO:0005544
Cma10g00011 700 Gene3D C2 domain 103 238 IPR035892 -
Cma10g00011 700 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 104 217 IPR035892 -
Cma10g00011 700 Pfam Copine 414 625 IPR010734 -
Cma10g00011 700 Pfam C2 domain 249 341 IPR000008 -
Cma10g00011 700 Pfam C2 domain 105 209 IPR000008 -
Cma10g00011 700 SMART C2_3c 99 212 IPR000008 -
Cma10g00011 700 SMART C2_3c 250 352 IPR000008 -
Cma10g00011 700 CDD C2A_Copine 98 215 - -
Cma10g00011 700 Gene3D C2 domain 244 365 IPR035892 -
Cma10g00011 700 ProSiteProfiles C2 domain profile. 79 213 IPR000008 -
Cma10g00011 700 PANTHER CALCIUM-DEPENDENT PHOSPHOLIPID-BINDING COPINE FAMILY PROTEIN-RELATED 55 626 - -
Cma10g00011 700 SUPERFAMILY vWA-like 394 576 IPR036465 -
Cma10g00011 700 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 250 340 IPR035892 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00011 - - - csv:101215724 1027.31
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00011 Cma11g00006 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma05g00735 Cma-Chr5:4173390 Cma10g00011 Cma-Chr10:35998 0 dispersed
Cma10g00011 Cma-Chr10:35998 Cma15g00367 Cma-Chr15:1681009 3.62E-23 dispersed
Cma10g00011 Cma-Chr10:35998 Cma11g00006 Cma-Chr11:31149 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g18 . Blo16g00293 . . . Bpe13g00181 Bma06g00290 . . . Cma10g00011 Cma11g00006 Car10g00008 Car11g00005 . . Cpe04g01639 . . . . . . . . . . . . . . . . Cone13ag0266 Cone19ag0250 . . . . . . Bda11g01570 . . . . . . Cmo10g00009 Cmo11g00005 . . . . . Cpe18g00942 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000909 3 5 3 2 2 2 3 3 2 2 2 2 3 1 2 3 2 3 3 2 2 2 3 2 2 2 1 4 6 9 83
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00011 Cma_Chr10 FPKM 25.823111 30.047421 23.365118 23.36377 18.023623 18.279348 18.984789 27.182882 24.194309 25.476545