Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00013 ATGGCTCACTCCGCATTTCCATATCCCACACTCTGCTTCCACCCCGACTCTACCACAAATTCTCGATTCTTCCTGTCTCCACCCCCTCTCAAGCTTGTTAAATTTTCAAGAACGCCCAATGTTAATGCGCCTGCGCCTGCCCCACCACTCTCCGCCGTAGCTACCGAACTCCCCGTCGTCGACGGGGCAACAATTGCAGCGATCGGCGGCGGTTCGGTTGCCGCGCTCGCTGCCGTTCTATCTCTCACCGACCCGGAGAGACGTCGCCGCCTGCAGGCCGAAGAGGTGGGTGGTGGCGACAAGGATGTGGTGAAGGAATACTTCAACAATTCGGGGTTTCAGAGGTGGAAGAAAATATATGGAGAGACTGATGATGTGAACCGGGTGCAGCGAGACATTAGGTTGGGTCACTCCAAGACGGTGGAGAATGTGATGGGCATGTTGAAAGATGAGGGCCCACTCACAGGAGTAACAGTCTGCGATGCTGGCTGTGGAACCGGTAGCTTATCCATTCCGCTGGCCAAGGAAGGTGCCATCGTCTTCGCCAGTGATATTTCTGCTGCTATGGTCGCCGAGGCCCAAAACAAGGCAAAAGAAGAGGTTGCGGGAGGCGTGGTGCCAAAATTTGAAGTGAAGGATTTGGAGAGCTTGGAAGGGAAGTATGATACGGTAGTATGTCTGGATGTTTTGATACACTATCCCCAGAACAAGGCAGACGGCATGATTGCGCACCTTGCATCCTTAGCTGAAAAGCGTTTAATCATAAGCTTTGCGCCCAAAACATTTTACTATGATCTGCTGAAGAGGGTGGGAGAGTTGTTCCCCGGACCTTCCAAGGCAACCAGGGCATATCTGCACTCGGAGGCAGACGTGGAGACCGCGTTGCGGAGGGTTGGCTGGAAAATTAGGAAGAGAGGTCTAATCTCCACCCAGTTTTACTTCGCCACACTGGTTGAGGCAGTTCCTGCTTGA 972 53.29 MAHSAFPYPTLCFHPDSTTNSRFFLSPPPLKLVKFSRTPNVNAPAPAPPLSAVATELPVVDGATIAAIGGGSVAALAAVLSLTDPERRRRLQAEEVGGGDKDVVKEYFNNSGFQRWKKIYGETDDVNRVQRDIRLGHSKTVENVMGMLKDEGPLTGVTVCDAGCGTGSLSIPLAKEGAIVFASDISAAMVAEAQNKAKEEVAGGVVPKFEVKDLESLEGKYDTVVCLDVLIHYPQNKADGMIAHLASLAEKRLIISFAPKTFYYDLLKRVGELFPGPSKATRAYLHSEADVETALRRVGWKIRKRGLISTQFYFATLVEAVPA 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 44352 45791 - CmaCh10G000130.1 Cma10g00013 301329

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00013 323 PANTHER METHYLTRANSFERASE 65 319 - -
Cma10g00013 323 Gene3D Vaccinia Virus protein VP39 97 323 IPR029063 -
Cma10g00013 323 Pfam Magnesium-protoporphyrin IX methyltransferase C-terminus 226 321 IPR010940 GO:0015995|GO:0046406
Cma10g00013 323 TIGRFAM BchM-ChlM: magnesium protoporphyrin O-methyltransferase 100 319 IPR010251 GO:0015995|GO:0046406
Cma10g00013 323 ProSiteProfiles Magnesium protoporphyrin IX methyltransferase (EC 2.1.1.11) family profile. 1 322 IPR010251 GO:0015995|GO:0046406
Cma10g00013 323 CDD AdoMet_MTases 158 257 - -
Cma10g00013 323 PANTHER MAGNESIUM PROTOPORPHYRIN IX METHYLTRANSFERASE, CHLOROPLASTIC-RELATED 65 319 - -
Cma10g00013 323 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 96 305 IPR029063 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00013 K03428 bchM, chlM; magnesium-protoporphyrin O-methyltransferase [EC:2.1.1.11] - csv:101206600 552.747
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g23 . Blo16g00291 . . . Bpe13g00183 Bma06g00285 . . . Cma10g00013 . Car10g00009 . Sed08g0101 . . Bhi02g00617 Tan09g2435 Cmetu02g1857 . Hepe09g0010 . . Cla06g01784 Cam06g1978 Cec06g2028 Cco06g2037 Clacu06g1936 Cmu06g1877 Cre06g2689 . . . Cone19ag0247 . . . . . . Bda11g01573 . . . . . . Cmo10g00010 . . . . . . Cpe18g00941 . . . . . . . . . . . . . . . Csa01g00008 Chy02g02706 Cme02g02114
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011634 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00013 Cma_Chr10 FPKM 3.702767 3.397613 56.58799 50.255878 251.997345 263.897308 249.53244 36.709682 39.311508 36.336567