Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00017 ATGGCCTCCTCCGAGGTTTCCATCAACCCCAATTCCGCCTCCGTTCCCTTCAACGACCATGCCGATTCTACCAAACTCACCTCCGATCCACCTAACGCTCTCTCTGCCAGGGATGCTGATTTCGCCCTCTTCACCGAGCTTTGGAATGCTTGTGCTGGTCCTCTCGTTTCTGTTCCTCGCGAAAACGACCGCGTCTTCTACTTCCCTCAGGGCCACATCGAACAGGTGGAAGCATCCACCAGTCAAGTGGCGGACCAACAGATGCCAGTTTATGACCTTCCATCCAAGATCCTCTGCCGCGTTATTAATGTGCATTTAAAGGCCGAGCCAGACACCGATGAGGTATTTGCACAAATAACTTTGGTTCCAGAGGCAAATCAAGATGAGCATGCTGTGGACAAGGAACCCCCGCCTCCTCCACCCCGGAGATTTCACGTGCATTCTTTTTGCAAGACTCTGACTGCCTCTGACACCAGTACTCATGGGGGGTTTTCAGTCTTGAGACGCCATGCTGATGAATGTCTTCCACCACTGGACATGTCACGACAGCCTCCTACACAGGAGTTGGTTGCCAAGGATTTGCATGGAAATGAATGGCGTTTTCGTCATATATTTCGAGGACAACCACGAAGGCATTTGCTTCAGAGTGGTTGGAGTGTTTTCGTGAGCTCAAAAAGACTGGTTGCAGGAGATGCTTTTATATTCTTGAGGGGTGAGAATGGAGAACTGCGTGTTGGTGTTAGGCGTGCCATGAGACAACATGGTAACGTCCCTTCATCGGTCATATCTAGCCATAGCATGCATCTTGGTGTGCTTGCAACTGCATGGCATGCTATTTCTACAGGCACAATGTTCACTGTCTACTACAAGCCTAGGACTAGCCCTTCTGAATTCATTGTTCCATATGACCAGTATATGGAGTCTATTAAGAAGAGCTACACCATAGGAATGAGGTTCAAAATGAGATTTGAAGGTGAAGAGGCTCCTGAGCAGAGATTCACTGGTACTATCATTGGATGTGAAGATGCTGATCCCAAAAGGTGGAAAGATTCCAAGTGGAGATGTCTGAAGGTGAGATGGGATGAGACTTCTACTATTTCTCGTCCTGAGAAAGTCTCACCATGGAAAATTGAGCCTGCTCTTGCTCCTCCTGCACTGAACCCTCTTCCTATGACTAGACCTAAAAGGCCTCGATCAAACATGGTGCCTACATCCCCTGATTCCTCTGTTCTTACACGAGAAGGCTCATCAAGAGTGACTGTAGACCCTTCACCAGTCAGTGCATTTACAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTAAGGGGCAATTTTATCGATGGCAATGATCCTGATGCTGCTGAAAAATCTGTTATGTGGCCTCCTTCACTAGATGATGAGAAAATTGATGTGGTTTCTACATCTAAGAAACATGGAGCAGATTGCTGGATAACTCCAGGAAGGAGTGAGCCAACCTACGCAGATCTTCTGTCAGGTTTTGGAACTAATATTGATTCATCTCATGGTGTCCGAGCTGGCATGGGAGATCCAGCAGTAGTAACTGCTAATTCAATCAGAAAGCATGTCATGGATCAAGATGGAAAGTTTAACTTCCTTGGTGGTAGCTCATGGTCTGTCTTGCCTTCTGGTCTCTCGCTCAACCTTGTGGACTCTAGTCAGAAGGGCCATATTCAGGCTGGTGACTTATCTTATCAAGTGAGAGGAAATGCTTCCTTCAATGGATTTGGTGATCATTCCGTGGCCCATTGTCATAGAACAGAACAGCCTCATGGAAACTGGTTGATGGCTCCACTTCCGTCTCATTTTGATTATCCAGTTCAGTCAACTGAACTGATGTCGATGCCTATGGTATTTCAGAATCAAGATATAATGAAACCCAAAGATGGGAATTGTAAGCTTTTTGGCATCTCTCTCATTAAGAATCCTGCCATTCCAGACCCTGCAGGATTGAATAGAAATATGAATGGGGCAGATGTTACGCATCTGAATATACATCAAATCCATTCAAACGAGTCTGACCTCAAGTCTGAACCATCTAGGGGTTCAATGTTGGCTGATAAATCCCTTGCCATTAATGATGCCGATAAGTTGCAGCAAACATGCACGCAAAACTTGAAGGATGCACACTGCAAATCACAGGGTACTTCAGCAAGGAGTTGTACAAAGGTCCAGAAGCAGGGGATTGCACTTGGAAGGTCAGTTGATCTTAGCAGGTTCAACAATTACGATGAATTGGTTGCTGAATTGGACCAACTGTTTGAGTTTGGTGGCGAGCTGCTGGCTCCCAAAAAGAATTGGCTTATTGTATATACGGACGATGAAGGTGATATGATGCTTGTTGGAGACGATCCCTGGCAGGAGTTTTGTGGTATGGTTCGGAAGATTTTTATCTATACAAGAGAAGAGGTCCAGAAGATGAATCGAGGATCTCTAAATTTGAAAGGCGATGAAAATCCATCTGTAGAAGGGAAAGAAGCAAAAGAGATTGAAGGTCAGGCAGTGAGATCCGAAATATTGATATGCAGATTATTAGGACTTGTTTTTGGTGCGGTACTGAAGGAGTCGAGCAGAGTAATGCAGCGAGGCCGGAAGGCTCCTGTTGTAACTCAAGGAATGTAG 2640 45.91 MASSEVSINPNSASVPFNDHADSTKLTSDPPNALSARDADFALFTELWNACAGPLVSVPRENDRVFYFPQGHIEQVEASTSQVADQQMPVYDLPSKILCRVINVHLKAEPDTDEVFAQITLVPEANQDEHAVDKEPPPPPPRRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSRQPPTQELVAKDLHGNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQHGNVPSSVISSHSMHLGVLATAWHAISTGTMFTVYYKPRTSPSEFIVPYDQYMESIKKSYTIGMRFKMRFEGEEAPEQRFTGTIIGCEDADPKRWKDSKWRCLKVRWDETSTISRPEKVSPWKIEPALAPPALNPLPMTRPKRPRSNMVPTSPDSSVLTREGSSRVTVDPSPVSAFTRVLQGQEFSTLRGNFIDGNDPDAAEKSVMWPPSLDDEKIDVVSTSKKHGADCWITPGRSEPTYADLLSGFGTNIDSSHGVRAGMGDPAVVTANSIRKHVMDQDGKFNFLGGSSWSVLPSGLSLNLVDSSQKGHIQAGDLSYQVRGNASFNGFGDHSVAHCHRTEQPHGNWLMAPLPSHFDYPVQSTELMSMPMVFQNQDIMKPKDGNCKLFGISLIKNPAIPDPAGLNRNMNGADVTHLNIHQIHSNESDLKSEPSRGSMLADKSLAINDADKLQQTCTQNLKDAHCKSQGTSARSCTKVQKQGIALGRSVDLSRFNNYDELVAELDQLFEFGGELLAPKKNWLIVYTDDEGDMMLVGDDPWQEFCGMVRKIFIYTREEVQKMNRGSLNLKGDENPSVEGKEAKEIEGQAVRSEILICRLLGLVFGAVLKESSRVMQRGRKAPVVTQGM 879
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 64046 69908 + CmaCh10G000170.1 Cma10g00017 301333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00017 879 PANTHER AUXIN RESPONSE FACTOR 2 30 832 - -
Cma10g00017 879 CDD B3_DNA 147 249 IPR003340 GO:0003677
Cma10g00017 879 Gene3D - 146 251 IPR015300 -
Cma10g00017 879 SUPERFAMILY CAD & PB1 domains 725 802 - -
Cma10g00017 879 ProSiteProfiles PB1 domain profile. 725 809 IPR000270 GO:0005515
Cma10g00017 879 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 30 832 IPR044835 GO:0003677|GO:0006355|GO:0009725
Cma10g00017 879 MobiDBLite consensus disorder prediction 383 423 - -
Cma10g00017 879 ProSiteProfiles B3 DNA-binding domain profile. 149 251 IPR003340 GO:0003677
Cma10g00017 879 SMART B3_2 149 251 IPR003340 GO:0003677
Cma10g00017 879 MobiDBLite consensus disorder prediction 1 31 - -
Cma10g00017 879 Gene3D - 721 814 - -
Cma10g00017 879 SUPERFAMILY DNA-binding pseudobarrel domain 146 278 IPR015300 -
Cma10g00017 879 Pfam AUX/IAA family 712 807 IPR033389 -
Cma10g00017 879 Pfam Auxin response factor 275 357 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Cma10g00017 879 Pfam B3 DNA binding domain 149 250 IPR003340 GO:0003677
Cma10g00017 879 MobiDBLite consensus disorder prediction 398 423 - -
Cma10g00017 879 Gene3D - 312 382 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02760 Cma-Chr4:18556833 Cma10g00017 Cma-Chr10:64046 0 dispersed
Cma10g00017 Cma-Chr10:64046 Cma15g01291 Cma-Chr15:8184046 5.63E-32 dispersed
Cma20g00475 Cma-Chr20:2288731 Cma10g00017 Cma-Chr10:64046 3.21E-22 dispersed
Cma20g00489 Cma-Chr20:2380923 Cma10g00017 Cma-Chr10:64046 8.54E-76 dispersed
Cma10g00017 Cma-Chr10:64046 Cma16g00533 Cma-Chr16:2722122 1.66E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35670 PF02309 AUX_IAA 2.20E-11 CL0072 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00017 - - cmos:111429821 1691.78