Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00018 ATGCTATTTAAATTTCAGAAGAACTTGAAGAGGGGCTCTTCCTCTCAGTCTCATTTTCTCCGCCCTTCCCTTCCCTTCCCGTCCCATACAACACCCCTCAGTATCAAGCTCAAGTCCGTGGACATCATGGCTGGAGTTCTGGTTCAGTCCACAGATATTCCTGGTCTGATCGGTGGGAGAAAGAATGGCCTATCAGGAGGGACAGGAGACGCAAAGCGGCCTGTTAAAATGATGGCCTGCGTACATGCACCTGGTTTGAGAATCAGAAGTTTCTCTGGACTTCGAGGATTTAATTCTTTGGATAACATGTTGAGAAATGGACAAGATTTTCATTCCAGGGTGGCCATTACAATCTCGTCTAGGCGACGAAAGGCTAGCAGATGCGTTCCAAAAGCTATGTTTGAGCGATTCACAGAAAAGGCAATTAAAGTTATCATGCTTGCTCAGGAGGAAGCGAGGCGGCTTGGTCACAATTTTGTTGGCACAGAGCAGATACTTTTAGGTCTTATTGGTGAAGGCACTGGTATCGCTGCTAAGGTTCTTAAATCTATGGGAATCAATCTTAAAGATGCGCGCGTGGAGGTGGAGAAGATAATTGGTCGGGGCAGTGGCTTTGTTGCTGTAGAAATTCCGTTCACTCCTCGTGCAAAGCGTGTATTGGAACTTTCTCTTGAGGAAGCTCGCCAACTTGGCCACAATTATATTGGGTCGGAGCACTTGCTTCTAGGACTACTTCGAGAAGGTGAGGGCGTTGCAGCTCGTGTTCTTGAAAATTTAGGTGCCGATCCTAGTAACATTCGCACTCAGGTTATTCGAATGGTGGGTGAGAGCACAGAGGCTGTTGGTGCTGGTGTTGGAGGAGGAAGCAGTGGTAACAAGATGCCAACCCTGGAAGAGTACGGCACAAACTTAACTAAGCTGGCTGAAGAGGGTAAACTAGATCCTGTTGTTGGAAGGCAGCAGCAAATAGAACGTGTAACCCAAATTTTGGGTCGGCGGACAAAAAATAATCCTTGCCTCATTGGCGAACCTGGTGTTGGAAAAACTGCTATTGCAGAAGGTCTGGCCCAAAGGATTGCTAATGGGGATGTCCCTGAAACAATAGAAGGAAAGAAGGTTATAACTCTGGATATGGGCCTTCTTGTAGCTGGCACAAAATATCGTGGAGAGTTTGAGGAAAGATTAAAGAAACTGATGGAGGAAATTAAACAAAGTGATGAGATTATCCTTTTCATTGATGAGGTGCACACGTTAATTGGAGCAGGGGCTGCAGAAGGAGCTATTGATGCAGCAAATATATTGAAACCTGCCCTTGCAAGAGGTGAACTGCAGTGCATTGGAGCCACGACATTGGATGAATACAGGAAGCACATTGAAAAAGACCCAGCCTTAGAAAGGAGATTTCAGCCAGTGAAAGTGCCGGAACCATCTGTGGATGAAACCATACAGATTTTGAAAGGCCTTAGAGAGCGTTATGAAATCCACCACAAACTTCGTTACACAGATGAAGCATTAGTAGCTGCTGCACAGCTGTCATACCAGTACATCAGTGATCGATTCTTGCCTGATAAGGCAATCGACTTGGTTGATGAAGCAGGTTCTCGGGTTCGCCTTCGTCATGCTCAACTACCTGAAGAAGCCAGGGAGCTTGAGAAAGAGCTGAGGCAGATCACAAAGGAGAAGAATGAGGCTGTTCGAAGTCAAGACTTTGAGAAGGCTGGAGAATTGCGTGATAGAGAAATGGAACTTAAGACTAAGATATCTGCTCTAGTAGATAAGGGCAAGGAGATGAGCAAGGCGGAAAGTGAGGCAGGAGATGTAGGCCCTGTTGTTACTGAAGTTGATATTCAGCATATTGTCTCCTCCTGGACTGGCATTCCTGTCGAGAAAGTATCTACTGATGAATCTGATCGCCTCCTCAAAATGGAAGAGACCCTCCATAAAAGGGTCATTGGTCAAGATGAAGCAGTTAAAGCTATCAGCCGTGCCATACGCCGAGCTCGTGTTGGGCTCAAGAATCCCAACCGTCCCATTGCAAGCTTTATATTTTCTGGCCCAACTGGTGTTGGTAAATCTGAGTTAGCTAAAGCATTGGCTGCATACTATTTTGGGTCTGAAGAAGCAATGATTCGACTTGACATGAGTGAGTTTATGGAAAGGCACACTGTCTCCAAGCTTATTGGTTCTCCTCCTGGTTATGTTGGTTACACGGAGGGTGGTCAATTAACCGAGGCCGTTCGTCGTCGTCCGTACACAGTGGTGCTCTTTGATGAGATTGAGAAGGCTCATCCTGATGTGTTCAATATGATGCTTCAAATTTTGGAGGATGGAAGGTTGACGGATAGCAAGGGCAGGACTGTAGACTTCAAAAATACACTTTTGATAATGACATCAAACGTGGGAAGTAGTGTTATAGAGAAGGGAGGTCGCAGGATAGGGTTTGACCTTGATTATGACGAGAAGGATAGTAATTATAACCGGATCAAGAGCTTGGTGACGGAGGAACTGAAACAATACTTCAGGCCTGAGTTTTTGAATAGGTTGGACGAGATGATTGTCTTCCGTCAACTCACAAAACTGGAGGTGAAGGAGATTGCGGATATAATGCTAAAGGAGGTATTTGACAGATTAAAAACAAAAGAAATTGACCTTCAAGTGACAGAGAGATTTAGAGATAGAGTGGTGGAGGAAGGATATAACCCAAGCTACGGTGCGAGACCATTGAGAAGGGCCATAATGAGGCTTTTGGAGGACAGCATGGCTGAGAAAATGCTGGCAAGGGAGATCAAAGAGGGTGACTCGGTAATAGTGGATGTTGATTCAGACGGAAACGTGACAGTACTCAACGGCAGCAGTGGTGCTCCCGAGTCCTTGCCGGATGCTATCCCCGTGTGA 2895 45.91 MLFKFQKNLKRGSSSQSHFLRPSLPFPSHTTPLSIKLKSVDIMAGVLVQSTDIPGLIGGRKNGLSGGTGDAKRPVKMMACVHAPGLRIRSFSGLRGFNSLDNMLRNGQDFHSRVAITISSRRRKASRCVPKAMFERFTEKAIKVIMLAQEEARRLGHNFVGTEQILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGSGFVAVEIPFTPRAKRVLELSLEEARQLGHNYIGSEHLLLGLLREGEGVAARVLENLGADPSNIRTQVIRMVGESTEAVGAGVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQQQIERVTQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIANGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQILKGLRERYEIHHKLRYTDEALVAAAQLSYQYISDRFLPDKAIDLVDEAGSRVRLRHAQLPEEARELEKELRQITKEKNEAVRSQDFEKAGELRDREMELKTKISALVDKGKEMSKAESEAGDVGPVVTEVDIQHIVSSWTGIPVEKVSTDESDRLLKMEETLHKRVIGQDEAVKAISRAIRRARVGLKNPNRPIASFIFSGPTGVGKSELAKALAAYYFGSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAHPDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRRIGFDLDYDEKDSNYNRIKSLVTEELKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLKEVFDRLKTKEIDLQVTERFRDRVVEEGYNPSYGARPLRRAIMRLLEDSMAEKMLAREIKEGDSVIVDVDSDGNVTVLNGSSGAPESLPDAIPV 964
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 70380 79701 + CmaCh10G000180.1 Cma10g00018 301334

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00018 964 Gene3D - 629 855 IPR027417 -
Cma10g00018 964 Gene3D - 479 623 - -
Cma10g00018 964 ProSiteProfiles Clp repeat (R) domain profile. 134 276 IPR004176 -
Cma10g00018 964 Pfam C-terminal, D2-small domain, of ClpB protein 857 937 IPR019489 -
Cma10g00018 964 ProSitePatterns Chaperonins clpA/B signature 1. 429 441 IPR018368 GO:0005524
Cma10g00018 964 ProSiteProfiles UVR domain profile. 551 586 IPR001943 GO:0005515
Cma10g00018 964 Pfam AAA domain (Cdc48 subfamily) 676 850 IPR003959 GO:0005524|GO:0016887
Cma10g00018 964 Pfam ATPase family associated with various cellular activities (AAA) 339 455 IPR003959 GO:0005524|GO:0016887
Cma10g00018 964 Gene3D - 133 281 IPR036628 -
Cma10g00018 964 SUPERFAMILY Double Clp-N motif 135 275 IPR036628 -
Cma10g00018 964 Pfam AAA lid domain 477 578 IPR041546 -
Cma10g00018 964 Coils Coil 388 408 - -
Cma10g00018 964 CDD AAA 651 799 - -
Cma10g00018 964 Gene3D UVR domain 543 607 - -
Cma10g00018 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 626 943 IPR027417 -
Cma10g00018 964 PANTHER ATP-DEPENDENT CLP PROTEASE 117 964 - -
Cma10g00018 964 CDD AAA 317 469 - -
Cma10g00018 964 SMART ClpB_D2_small_2 857 947 IPR019489 -
Cma10g00018 964 Coils Coil 540 567 - -
Cma10g00018 964 Pfam Clp amino terminal domain, pathogenicity island component 148 200 IPR004176 -
Cma10g00018 964 Pfam Clp amino terminal domain, pathogenicity island component 224 275 IPR004176 -
Cma10g00018 964 Gene3D - 857 953 - -
Cma10g00018 964 SMART AAA_5 677 858 IPR003593 -
Cma10g00018 964 SMART AAA_5 334 474 IPR003593 -
Cma10g00018 964 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 294 576 IPR027417 -
Cma10g00018 964 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 726 744 IPR001270 GO:0005524
Cma10g00018 964 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 788 802 IPR001270 GO:0005524
Cma10g00018 964 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 681 699 IPR001270 GO:0005524
Cma10g00018 964 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 755 773 IPR001270 GO:0005524
Cma10g00018 964 PANTHER ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPA HOMOLOG CD4B, CHLOROPLASTIC 117 964 - -
Cma10g00018 964 Gene3D - 287 477 IPR027417 -
Cma10g00018 964 ProSitePatterns Chaperonins clpA/B signature 2. 711 729 IPR028299 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00018 K03696 clpC; ATP-dependent Clp protease ATP-binding subunit ClpC - csv:101207083 1681.0
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00018 Cma11g00007 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00584 Cma-Chr1:3033724 Cma10g00018 Cma-Chr10:70380 0 dispersed
Cma01g00828 Cma-Chr1:4429684 Cma10g00018 Cma-Chr10:70380 0 dispersed
Cma01g01038 Cma-Chr1:7678657 Cma10g00018 Cma-Chr10:70380 0 dispersed
Cma09g01047 Cma-Chr9:5438843 Cma10g00018 Cma-Chr10:70380 0 dispersed
Cma10g00018 Cma-Chr10:70380 Cma13g00138 Cma-Chr13:964701 0 dispersed
Cma10g00018 Cma-Chr10:70380 Cma11g00007 Cma-Chr11:37132 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g29 . . Bda06g00709 Bda15g00698 . . . . . . Cma10g00018 Cma11g00007 Car10g00013 Car11g00006 . . . . . . . . . . Cla06g01783 Cam06g1977 Cec06g2027 Cco06g2035 Clacu06g1934 Cmu06g1875 Cre06g2687 . . Cone13ag0256 Cone19ag0241 . . . . . Blo15g00190 . . Bpe07g00907 . . . . Cmo10g00016 Cmo11g00006 . . . . . Cpe18g00938 . . . . . . . . . . . . . . Lsi06g01681 Csa01g00010 Chy02g02703 Cme02g02111
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002235 2 2 2 1 2 2 3 2 2 2 2 2 4 2 2 4 2 2 4 2 2 1 2 2 2 2 1 2 2 1 63
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00018 Cma_Chr10 FPKM 24.316914 25.528009 83.053238 82.622162 103.072716 112.954895 105.520317 179.194977 180.827469 167.594193