Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00020 ATGTTTTCCTCCTTCACAAAAGCTGGTGCCTATTCGTGCAGCTATGTGCATGGATCTCCATTGTTAGAAATCTCAAGTGCATTTGAATCCCGAGAAAGGGCTGAAAAATTAGCCGCCGCTATCGGAAGGATCTTGCTATTGGACCTTGTCATCAGAAATGAAGATCGGCTCCCTTGTCGTCTTCTTCGTTGGCGTGGAAATTCTGCAAATTTGCTTTTGGCTGATAGAATGGCGTGTGCAAATTTGAATGCATTCGAGGAAGCCTTTGATTCTGCCATTAAACGGTACAGACCAAAAGTCATTTCAACGCTTCAAAAAGAAAGAAGGGGAACTTCAATGGACAATCGACCAAGTTCTAGTTCAGGGTTGGTTTCAGAGACCTCTGAACTTTCTGATAATGTTGAATCCCCAAAATCTAGTAACCTAAGTGTTAAAAGTCAAATATCAGATGAAGTAATGCTTTGTGATTTTAACATTGTGGCTATTGACTCTGGTGTTCCTCGTCGTCCTCCTGCTGGAAAACGTGCTAATGACCAGTCAATTTACCCAAAATTAGTTGAGTTGTTACTCAACAGTTCCGAGTTCTCCTCTAATCTATTGCATGACATTACGGGAGGGAAATTAGGGTTCCCTTCATTAGCTGATGCCAACTCAACTTCTGGCATACAGCTTACAGATATGAGTTCTATTGTCCATGAATTTCGGTATGGGTTTCGTGCTGCTCTTAGGGACTTGCAAGGATTTCACATATTTTTGCTTACCCTTCACCAAAAGTTAGACAACTCATTACGAGCATTCATGAATATCATAAATAAATTTCCCTTGGGGGAATCCGATAAAGAGGACTCAGGGGTTCCCGAGTCCCATTTGCAGGCTTCTACCACTATTCATTGTTTATCTCCGCGGGGTAAGGAACGAACCTCCAGTGACGGTAATATAGATGTTACAGAGTCAGCTCCAAGATCATCATCGTCAGGAAATAGAGAAAGCTCAGACTTATCTTCTCCCTTGTCACGAGATAGCTCACAAGGAAAGTTACACAGGGGAGGTGCAGAGCCCATTCATAGCCTTCGTTTGACTGCAAAGCTTCGAGACTTCCATAAATTTGCCAAGGTTGATGCTGAATCAAATAAAGAATTGGATATGTGGAATGAAGTGTTGAAAAATGAAGCTGTTAAACTCTGCCAGGAGAATAAATTTAATACTGGGTTTTTTGAGGGCAGCGATAGTCATGGAGTTGTGGATGCTTATGAATTGAAGGTGAGGCTTGAGCACATTCTTGAAAGGATTGCACTGATATCTGAGGCTGCAAATACAGAAAGGCCTTCTTCAGTTACACCTGCCTTGTTTATAGGTGGTGCCTTGGCTGCAAGATCTGTTTACACTCTTCAGCATCTAGGAGTTACTCATATTTTATGTCTCTGCTCCAATGAAATTGGGCAGTCAGATTCTCAGTTTCCTGATCTATTTGAATACAAGAACTTTTCAATAAGTGACAATGAAGACTCAAACATCAGCAGTATCTTTGAGGAAGCTTCTGATTTTGTTGATGACGTTGAAAGAAAGGGTGGGAAGGTCCTGGTTCACTGTTTTGAAGGGAAAAGCAGAAGTGCCACATTAGTTCTTGCTTACTTGATGCTCAGAAAGAAATACACACTGCTAAAAGCATGGAATGCTTTGAAACGAGTTCACCGTCGAGCTCAGCCTAATGACGGGTTTGCTAAAACTTTGTTAGAATTAGATCGAAGAATACATGGAAAAGTTTCCATGGAGTGGCAGTCACGAAAACCAACTATGAAAGTCTGCCCAATTTGTGGGAAAAATGCTGGACTGAGCAGTAGCTCACTGAAACTTCATCTGCAAAAATCACACAAGAAGCTATCATCTGGGAGCGTAGACAGTGCAATGACTATGGAAATACAGAAAGCACTAACAGCTCTGAAAATCAGTCGTGGCGGAAGCGTGAGCCCAACCCAGAGGCAGTCTCTACTGATCTTAGATGAATAG 2007 41.95 MFSSFTKAGAYSCSYVHGSPLLEISSAFESRERAEKLAAAIGRILLLDLVIRNEDRLPCRLLRWRGNSANLLLADRMACANLNAFEEAFDSAIKRYRPKVISTLQKERRGTSMDNRPSSSSGLVSETSELSDNVESPKSSNLSVKSQISDEVMLCDFNIVAIDSGVPRRPPAGKRANDQSIYPKLVELLLNSSEFSSNLLHDITGGKLGFPSLADANSTSGIQLTDMSSIVHEFRYGFRAALRDLQGFHIFLLTLHQKLDNSLRAFMNIINKFPLGESDKEDSGVPESHLQASTTIHCLSPRGKERTSSDGNIDVTESAPRSSSSGNRESSDLSSPLSRDSSQGKLHRGGAEPIHSLRLTAKLRDFHKFAKVDAESNKELDMWNEVLKNEAVKLCQENKFNTGFFEGSDSHGVVDAYELKVRLEHILERIALISEAANTERPSSVTPALFIGGALAARSVYTLQHLGVTHILCLCSNEIGQSDSQFPDLFEYKNFSISDNEDSNISSIFEEASDFVDDVERKGGKVLVHCFEGKSRSATLVLAYLMLRKKYTLLKAWNALKRVHRRAQPNDGFAKTLLELDRRIHGKVSMEWQSRKPTMKVCPICGKNAGLSSSSLKLHLQKSHKKLSSGSVDSAMTMEIQKALTALKISRGGSVSPTQRQSLLILDE 668
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 79961 82663 - CmaCh10G000200.1 Cma10g00020 301336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00020 668 MobiDBLite consensus disorder prediction 312 342 - -
Cma10g00020 668 MobiDBLite consensus disorder prediction 104 142 - -
Cma10g00020 668 MobiDBLite consensus disorder prediction 278 351 - -
Cma10g00020 668 MobiDBLite consensus disorder prediction 287 302 - -
Cma10g00020 668 Gene3D - 19 271 IPR036940 GO:0016301
Cma10g00020 668 ProSiteProfiles Dual specificity protein phosphatase domain profile. 441 586 IPR020422 GO:0006470|GO:0008138
Cma10g00020 668 Pfam Dual specificity phosphatase, catalytic domain 457 582 IPR000340 GO:0008138|GO:0016311
Cma10g00020 668 Pfam Actin-fragmin kinase, catalytic 14 166 IPR015275 -
Cma10g00020 668 ProSitePatterns Tyrosine specific protein phosphatases active site. 528 538 IPR016130 GO:0016311|GO:0016791
Cma10g00020 668 MobiDBLite consensus disorder prediction 114 142 - -
Cma10g00020 668 SUPERFAMILY Protein kinase-like (PK-like) 13 179 IPR011009 -
Cma10g00020 668 SMART dsp_5 441 583 IPR020422 GO:0006470|GO:0008138
Cma10g00020 668 CDD DSP 442 579 - -
Cma10g00020 668 PANTHER DUAL SPECIFICITY PHOSPHATASE FAMILY PROTEIN 12 667 - -
Cma10g00020 668 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 441 585 IPR029021 -
Cma10g00020 668 Gene3D Protein tyrosine phosphatase superfamily 418 587 IPR029021 -
Cma10g00020 668 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 506 562 IPR000387 GO:0016311|GO:0016791
Cma10g00020 668 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE PHS1 12 667 IPR035010 GO:0004721|GO:0009737|GO:0043622
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma08g01167 Cma-Chr8:7179293 Cma10g00020 Cma-Chr10:79961 2.19E-19 dispersed
Cma10g00020 Cma-Chr10:79961 Cma18g00752 Cma-Chr18:6746297 2.84E-19 dispersed
Cma10g00020 Cma-Chr10:79961 Cma04g00232 Cma-Chr4:1128648 2.32E-20 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00020 K14165 - csv:101220184 1149.81