Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00024 ATGCTTTCTCCAACAAGGAAGGCCTTGACAATGGCTGCTCTTATTCTTCATCTTTGCATTTACGAGGAGATTGTTCCCTCTTATGCTCAATCTGACAAGATTATCAGCCTTCCAGGGCAGCCCCCAGTGGGGTTTCATCAGTTTTCAGGTTATATTCATGTAGATGACCAAAAGCACAGAGCACTGTTTTACTACTTTGTTGAGGCAGAAACTGACCCTTCTTCGAAGCCTTTGGTTCTCTGGCTGAATGGAGGGCCTGGTTGTTCTTCCCTGGGAGTTGGGGCGTTCTCAGAAAATGGACCTTTTAGGCCAAACGGGGAGGTTTTAGTGAAAAATGAATACAGCTGGAACCGAGTAGCAAACATGTTATACTTAGAGACACCAGCAGGAGTTGGGTTCTCTTATGCTCATGATAGCGCTTCTCATGGGACAATGGACGATGAGGCCACAGCAAAAGACAATCTCATATTCTTGCAAAGGTGGTTCAATAAGTTCCCTCATTACAAGCAAAGAGCTATATTTCTAACGGGGGAGAGTTATGCAGGTCATTACATTCCTCAACTGGCAAGGCTTATGACTGAATTGGACAGAAAGGAGAAGATATTTAATCTGAAGGGAATTGCTCTAGGGAATCCGGTTTTAGAGTATGCCACAGACTTGAATTCAAGAGCGGAGTTCTTTTGGTCGCATGGATTGATATCAGACTCCACTTACACATTGTTCACTGCTGCTTGTAACTATTCCCGATACGTTAGTGAGTACTACAGAGACTCCATCTCAGGGGTTTGTTTGAGGGTGATGACCCAAGTCAACACAGAAACCAGTAAATTCGTGGACAAATATGACGTTACTCTTGATGTCTGTATTCCTTCAGTGCTCTCGCAGTCCAAGTATTTAAGCCCACAGCATGTCCGAGAGAGGATAGATGTTTGCATTGAAGATGAAACCGTTAAATATCTGAACCGAGAGGATGTGAAAAAGGCTCTTCACGCCCGTCTTGTCGGAGTCCACAACTGGGCTGTCTGCAGCGAAGCCCTGGACTACGAGCTTCTCAACCTGGAAATTCCTACCATTTCCATTGTTGGGTCACTTGTTAAAGCCGGCATACGGGTCTTGATTTACAGTGGCGATCAGGATTCAGTAATCCCGTTGATGGGTAGTCGTCGGTTGGTTGATAGGTTGGCAACAGAGCTGGGTCTTAACACTAGTGTTCCATACGGTGCTTGGTTCCAGGGAAAGCAGGTCGCAGGTTGGACCCAAGTTTATGGTGGTATCCTTTCATTCGCGACCATTCGAGGTGCCTCTCATGAAGCACCATTCTCGCAACCTCAAAGGTCACTTCTGCTATTCAAGTCGTTTCTGGATAACAGGCCTCCACCCCAAGTTTTCTGA 1392 45.91 MLSPTRKALTMAALILHLCIYEEIVPSYAQSDKIISLPGQPPVGFHQFSGYIHVDDQKHRALFYYFVEAETDPSSKPLVLWLNGGPGCSSLGVGAFSENGPFRPNGEVLVKNEYSWNRVANMLYLETPAGVGFSYAHDSASHGTMDDEATAKDNLIFLQRWFNKFPHYKQRAIFLTGESYAGHYIPQLARLMTELDRKEKIFNLKGIALGNPVLEYATDLNSRAEFFWSHGLISDSTYTLFTAACNYSRYVSEYYRDSISGVCLRVMTQVNTETSKFVDKYDVTLDVCIPSVLSQSKYLSPQHVRERIDVCIEDETVKYLNREDVKKALHARLVGVHNWAVCSEALDYELLNLEIPTISIVGSLVKAGIRVLIYSGDQDSVIPLMGSRRLVDRLATELGLNTSVPYGAWFQGKQVAGWTQVYGGILSFATIRGASHEAPFSQPQRSLLLFKSFLDNRPPPQVF 463
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 92799 95307 - CmaCh10G000240.1 Cma10g00024 301340

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00024 463 Pfam Serine carboxypeptidase 39 456 IPR001563 GO:0004185|GO:0006508
Cma10g00024 463 ProSitePatterns Serine carboxypeptidases, histidine active site. 426 443 IPR033124 GO:0004185
Cma10g00024 463 SUPERFAMILY alpha/beta-Hydrolases 35 458 IPR029058 -
Cma10g00024 463 Gene3D - 358 455 - -
Cma10g00024 463 ProSitePatterns Serine carboxypeptidases, serine active site. 175 182 IPR018202 GO:0004185
Cma10g00024 463 Gene3D - 311 347 - -
Cma10g00024 463 PANTHER SERINE CARBOXYPEPTIDASE-LIKE 45 24 460 - -
Cma10g00024 463 Gene3D alpha/beta hydrolase 28 289 IPR029058 -
Cma10g00024 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 112 124 IPR001563 GO:0004185|GO:0006508
Cma10g00024 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 125 135 IPR001563 GO:0004185|GO:0006508
Cma10g00024 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 186 IPR001563 GO:0004185|GO:0006508
Cma10g00024 463 PRINTS Carboxypeptidase C serine protease (S10) family signature 426 439 IPR001563 GO:0004185|GO:0006508
Cma10g00024 463 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 24 460 IPR001563 GO:0004185|GO:0006508
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00024 K16297 SCPL-II; serine carboxypeptidase-like clade II [EC:3.4.16.-] - pop:7484878 736.873
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma09g01090 Cma-Chr9:5868859 Cma10g00024 Cma-Chr10:92799 7.61E-134 dispersed
Cma10g00024 Cma-Chr10:92799 Cma14g01402 Cma-Chr14:10807880 0 dispersed
Cma15g00624 Cma-Chr15:2943198 Cma10g00024 Cma-Chr10:92799 3.95E-91 dispersed
Cma10g00024 Cma-Chr10:92799 Cma06g00878 Cma-Chr6:5463612 2.21E-173 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g33 . . . . . . . . . . Cma10g00024 . Car10g00016 . . . . Bhi02g00627 . . . . . . Cla06g01779 Cam06g1972 Cec06g2023 Cco06g2030 Clacu06g1930 Cmu06g1870 Cre06g2683 . . Cone13ag0254 . . . . . . . . . . . . . . Cmo10g00021 . . . . . . Cpe18g00936 . . . . . . . . . . . . . . Lsi06g01676 Csa01g00015 Chy02g02698 Cme02g02105
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000392 2 9 3 2 3 4 5 4 4 5 3 3 4 5 5 3 4 4 3 4 5 5 3 5 6 4 2 6 3 8 126
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00024 Cma_Chr10 FPKM 0.664083 1.282836 0.0 0.266099 5.223735 4.154477 5.304172 0.0 0.0 0.0