Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00029 ATGAACAACTCCCAATTCCTCCCCTCTCCCGACTCCTTTGCGCTCTCAAAAATGAACCCATGTAGCTGGGAGTTAGAAGAAGCGCCACAAATCCCCCACTTCCACCACCTTCTTCCACCTCAAATCCAATCTTCCTCGGTTCAGCAAACTGCCCACCACCTCCCGCCTCGCATATTACCCACCGCCACCAACACATTGCCTTCTTCCCACTCCCTCTCTCCGTGCAAGGAGGACCCAAATGAAAGAGGGGGCGACGGCAAGAGGAGAGCCTACAAGCCTGCAAAAGCAGGAGGAGGCCGCAAGAAGCTCAAAACCCAAGACCACCCTCAAGTTTCTCCACCACCAGGGTACATCCACGTAAGAGCCAGGAGGGGTCAGGCCACAGACCGCCACAGCCTTGCAGAAAGGGTGAGAAGACAGAAAATCAGCCAAAGGATGAAGGTTCTGCAGACGCTTGTTCCAGGCTGCCACAAGGTAACTGGGAAGGCCCTTATGCTCGACGAAATTATTAACTATGTTCAGTCCCTGCAAAGTCAAATTGAGCTTCTGTCCATGGAGCTTGCTTCTGTTCACCCCATCCGCTATGACTTTGGAATGGATAATCCAGAGGTATTCATCGGTACGCCAGTCACACAGGTATTGAATGGGAGTGGCATGGTATCACGTTCAGAGCAGGCAGAATTGGCATATAATATGGCGTCATGCAACACATTTCAGGCCACAGGCGGTGGCGGTGGCGGTGGTGACAGCCCAATCTTAACGGCTGAAAACGGCAGCTTTATCCCAGTGGACATGAATCCATCTCAACTTTTCCTGGATTATGGGAATGCTTCTCTGCATCATCTGTCATGA 852 51.88 MNNSQFLPSPDSFALSKMNPCSWELEEAPQIPHFHHLLPPQIQSSSVQQTAHHLPPRILPTATNTLPSSHSLSPCKEDPNERGGDGKRRAYKPAKAGGGRKKLKTQDHPQVSPPPGYIHVRARRGQATDRHSLAERVRRQKISQRMKVLQTLVPGCHKVTGKALMLDEIINYVQSLQSQIELLSMELASVHPIRYDFGMDNPEVFIGTPVTQVLNGSGMVSRSEQAELAYNMASCNTFQATGGGGGGGDSPILTAENGSFIPVDMNPSQLFLDYGNASLHHLS 283
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 106370 107979 + CmaCh10G000290.1 Cma10g00029 301345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00029 283 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 73 224 IPR024097 GO:0006355
Cma10g00029 283 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 124 191 IPR036638 GO:0046983
Cma10g00029 283 Gene3D - 123 193 IPR036638 GO:0046983
Cma10g00029 283 SMART finulus 132 182 IPR011598 GO:0046983
Cma10g00029 283 CDD bHLH_AtBPE_like 116 200 - -
Cma10g00029 283 PANTHER BHLH-TRANSCRIPTION FACTOR 73 224 - -
Cma10g00029 283 MobiDBLite consensus disorder prediction 75 92 - -
Cma10g00029 283 MobiDBLite consensus disorder prediction 57 117 - -
Cma10g00029 283 Pfam Helix-loop-helix DNA-binding domain 130 177 IPR011598 GO:0046983
Cma10g00029 283 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 126 176 IPR011598 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00029 Cma18g00297 CCT
Cma10g00029 Cma13g00828 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00029 Cma-Chr10:106370 Cma08g00243 Cma-Chr8:1373639 1.56E-43 dispersed
Cma10g00029 Cma-Chr10:106370 Cma13g00828 Cma-Chr13:6927496 5.71E-44 wgd
Cma10g00029 Cma-Chr10:106370 Cma18g00297 Cma-Chr18:1577245 5.09E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35671 PF00010 HLH 8.90E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00029 - - cmos:111429828 536.569