Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00030 ATGGCCGATATTCAACCCCCCGACCCCCAGACTAACGGCGCCCCTGCCCCTCCCGTCGTCTCCTCCGAAACTGTTGGATCCAAACGCCAGCGAAGACCCAGCGTCCGATTGGGGGATATCGGCGGCGACCAACCCTACGATTCCTATGCCCGCCGCACCAATAAGCCCTGGAAGTTTGCCTCGGATAATCGCAAGGATTCATCCGCTGCCTCTGCCAAGAACTCCAAAACTCGGCCCTTGACCAACTTGAGTTCGGCGGGGGGTGGGGGGGCCGAGTTTCGCGAGACCCCAGAGGGCGAAGACAAAGAGAACAATTTGGATAGCGTTGCAATTGGGAGCTGGAGATTGAAGGATTCCAAGCGGAGAGGCTCAGCCGCCACCAAGAGGGTCAGAACTAATTGGGTATCCCCCAAGCACGACGAAGGCGGTGGAGGGGGGGAGGCAGATGAAAAGTATAGCGCCGGCGAAGACGTGGAGGAGGGGTATCGGGATTACGACGTTGAGAACTCGGAAAGTCCCCTGAAAGAACAAAGCTCAATGCATTCGCTTGAGAATTTGGCGATAGAAGGTGAGGGGAAGGAAAGGGAGATGCTTTATCAGGGGAATAGAAGATGTACCCGGTCTAGGGTTTCGGAGGGTAGAGAGCACCAAGATGGGCTCGAGTTTTCAGGGCCTTCGGATACGGATGCCAGGAATTGGAAATGCGGGACTAGCGGTGATAGGAATGGGAATGGTGGGAGAGGAGTAGATGGGGTTAGAGTTTGGCTCAACGGCTTAGGGTTAGGTCGGTATGCTCCAGTTTTTGAAATTCACGAGGTGGACGATGAGGTGTTGCCAATGTTGACACTCGAGGATCTCAAGGATATGGGAATAACTGCAGTTGGGTCCCGGAGAAAAATGTACTCCGCAATCCAGAAGTTGGGGAAGGGATTTTCATGA 939 54.63 MADIQPPDPQTNGAPAPPVVSSETVGSKRQRRPSVRLGDIGGDQPYDSYARRTNKPWKFASDNRKDSSAASAKNSKTRPLTNLSSAGGGGAEFRETPEGEDKENNLDSVAIGSWRLKDSKRRGSAATKRVRTNWVSPKHDEGGGGGEADEKYSAGEDVEEGYRDYDVENSESPLKEQSSMHSLENLAIEGEGKEREMLYQGNRRCTRSRVSEGREHQDGLEFSGPSDTDARNWKCGTSGDRNGNGGRGVDGVRVWLNGLGLGRYAPVFEIHEVDDEVLPMLTLEDLKDMGITAVGSRRKMYSAIQKLGKGFS 312
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 110368 111306 + CmaCh10G000300.1 Cma10g00030 301346

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00030 312 Pfam SAM domain (Sterile alpha motif) 249 307 IPR001660 GO:0005515
Cma10g00030 312 PANTHER - 7 312 - -
Cma10g00030 312 ProSiteProfiles SAM domain profile. 247 310 IPR001660 GO:0005515
Cma10g00030 312 SMART SAM_4 244 310 IPR001660 GO:0005515
Cma10g00030 312 CDD SAM_superfamily 252 306 - -
Cma10g00030 312 PANTHER SCP160 7 312 - -
Cma10g00030 312 MobiDBLite consensus disorder prediction 202 247 - -
Cma10g00030 312 SUPERFAMILY SAM/Pointed domain 248 307 IPR013761 -
Cma10g00030 312 MobiDBLite consensus disorder prediction 1 181 - -
Cma10g00030 312 MobiDBLite consensus disorder prediction 202 222 - -
Cma10g00030 312 Gene3D - 248 307 IPR013761 -
Cma10g00030 312 MobiDBLite consensus disorder prediction 142 171 - -
Cma10g00030 312 MobiDBLite consensus disorder prediction 64 84 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00030 - - - cpep:111780732 586.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00030 Cma11g00009 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00030 Cma-Chr10:110368 Cma11g00229 Cma-Chr11:1158837 2.86E-19 dispersed
Cma10g00030 Cma-Chr10:110368 Cma11g00009 Cma-Chr11:49188 7.88E-172 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g40 . . Bda06g00712 Bda15g00693 Bpe12g00463 . . . . . Cma10g00030 Cma11g00009 Car10g00021 Car11g00009 . . Cpe04g01637 . . . . . . . Cla06g01774 Cam06g1966 Cec06g2017 Cco06g2024 Clacu06g1924 Cmu06g1865 Cre06g2678 . . Cone13ag0251 Cone19ag0234 . . . . . . . . Bpe07g00905 . . Bma08g00276 . Cmo10g00027 Cmo11g00008 . . . . . Cpe18g00930 . . . . . . . . . . . . . . . . Chy02g02692 Cme02g02100
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007477 3 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 0 1 0 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00030 Cma_Chr10 FPKM 8.707135 8.243769 9.460168 9.077937 11.099415 9.710217 8.44765 14.342394 12.098948 11.814364