Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00034 ATGTATCCATCACTCAAGAAGATGATGGATTTCGCTCGCGTGCAAAAGGAACTCCAAGAATGCAGTAAGGACATTGAGGCTTCAGGTATTAGAGTCACCCCCAAAGCCGATAATCTTTCCCACTTGCTCGGCACCATTCCTGGTCCTGTCGCTACTCCTTACGAAGGCGGCACCTTCCAAATTGACATCACGTTGCCAGATGGGTATCCATTTGAGCCGCCCAAAATGCAGTTTGCTACAAAAGTCTGGCACCCTAATATCAGTAGTCAAAGTGGTGCAATTTGCCTGGACATTTTGAAGGATCAGTGGAGCCCAGCACTTACGTTGAAGACAGCCCTGCTTTCTGTGCAGGCGTTGCTCTCTGCTCCTCAACCTGATGATCCTCAAGATGCTGTGGTGGCACAACAGTATCTTAGAGACTACCAGACTTTTGCTGGCACAGCTCGATACTGGACAGAAACTTTTGCCAAGACGTCATCACTTGGAGTGGAAGAAAAGGTTCAGAAGCTTGTGGAGATGGGATTCCCGGAGGCTCAAGTAAGGAGCAGTTTGGAAGCTGTGGGATGGGATGAAAATTTGGCCTTGGAAAAGCTCTGCTCCGGCTAA 606 48.84 MYPSLKKMMDFARVQKELQECSKDIEASGIRVTPKADNLSHLLGTIPGPVATPYEGGTFQIDITLPDGYPFEPPKMQFATKVWHPNISSQSGAICLDILKDQWSPALTLKTALLSVQALLSAPQPDDPQDAVVAQQYLRDYQTFAGTARYWTETFAKTSSLGVEEKVQKLVEMGFPEAQVRSSLEAVGWDENLALEKLCSG 201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 123234 126017 + CmaCh10G000340.1 Cma10g00034 301350

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00034 201 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 83 99 IPR023313 -
Cma10g00034 201 Gene3D - 156 201 - -
Cma10g00034 201 Gene3D Ubiquitin Conjugating Enzyme 7 155 IPR016135 -
Cma10g00034 201 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 9 157 IPR000608 -
Cma10g00034 201 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1-RELATED 10 194 - -
Cma10g00034 201 CDD UBA_II_E2_UBC27_like 164 199 IPR041974 -
Cma10g00034 201 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 10 194 - -
Cma10g00034 201 SMART uba_6 163 200 IPR015940 -
Cma10g00034 201 SMART ubc_7 12 157 - -
Cma10g00034 201 Pfam UBA/TS-N domain 164 197 IPR015940 -
Cma10g00034 201 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 162 201 IPR015940 -
Cma10g00034 201 CDD UBCc 13 152 IPR000608 -
Cma10g00034 201 SUPERFAMILY UBC-like 11 158 IPR016135 -
Cma10g00034 201 SUPERFAMILY UBA-like 162 201 IPR009060 GO:0005515
Cma10g00034 201 Pfam Ubiquitin-conjugating enzyme 13 151 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00034 K04649 HIP2, UBC1; ubiquitin-conjugating enzyme (huntingtin interacting protein 2) [EC:2.3.2.23] - csv:101209270 383.645
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00034 Cma-Chr10:123234 Cma15g01263 Cma-Chr15:8026674 3.71E-39 dispersed
Cma10g00034 Cma-Chr10:123234 Cma02g00682 Cma-Chr2:4175665 6.33E-41 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g46 . . . Bda15g00687 Bpe12g00466 . . . . . Cma10g00034 . Car10g00024 . Sed12g2540 . . Bhi02g00643 Tan09g2420 Cmetu02g0270 . . . . Cla06g01771 Cam06g1963 Cec06g2014 Cco06g2021 Clacu06g1921 Cmu06g1862 Cre06g2675 . . Cone13ag0249 Cone19ag0229 . . . . . Blo15g00101 . . . . . Bma08g00271 . Cmo10g00030 . . . . . . . . . . . . . . . . . . . . . Lsi06g01668 Csa01g00023 Chy02g02690 Cme02g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009524 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 0 1 1 4 1 1 1 0 1 1 2 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00034 Cma_Chr10 FPKM 18.384817 19.758219 26.250057 24.176157 31.439163 42.527596 35.424248 24.303408 23.328278 23.661673