Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00058 ATGGATGGTTGGTTTATTGCGTTGAAGTGTGTGTGTGTGTGTGCTGATACTGAAATACAAGAGAAGTGGTTTGAAAATAAAGAGGGAAATAGAGAGAAAGAAGTGAGAAATCCCACCATCCTCCCATTAAATCCCCTGCTGCATTTGGCCAAGCCCTTCTGGAACTGCCGCCGTCGTCGGCCGATGGAGAGCAACAACCAAGCCCAATCCTCCCCTTACCCTCCTCCTCAGGCCCCTGTTCCGGCCCCTCCCTTACACCACCTCCTTCAGCAGCAGCAGCAACAGCTTCAGATGTTCTGGTCCTTTCAGCGCCAAGAAATCGAACAGGTTAACGACTTTAAAAACCATCAGCTTCCTTTGGCCCGCATTAAGAAGATCATGAAAGCCGATGAGGACGTGCGTATGATATCCGCTGAGGCACCCATTTTGTTCGCCAAGGCGTGCGAGCTCTTCATTCTTGAACTCACGATTAGGTCATGGCTCCACGCGGAAGAGAATAAGAGGCGGACATTGCAGAAGAATGATATTGCAGCGGCCATCACGAGGACCGATATCTTTGATTTCTTGGTTGATATTGTGCCTAGGGATGAGATCAAGGACGAGGCTGGGTTGGGTGGCATGGTTGGAGCCACTGCCAGTGGAGTGCCGTACTATTATCCGCCTATGGGCCAACCGGCAGGTCCCCCTGGGGGGATGATGATTGGGAGACCGGCAATGGATCCCACCGGAGTCTACGCTCAGCCGCCGTCGCAGGCGTGGCAATCGGTGTGGCAGCCCGCCGCAGAGGATGGTTCTTACGCGAGTGGGGGCAGCAGCGGGCAGGGCAATCTTGATGGTCAGAGGTAG 846 53.9 MDGWFIALKCVCVCADTEIQEKWFENKEGNREKEVRNPTILPLNPLLHLAKPFWNCRRRRPMESNNQAQSSPYPPPQAPVPAPPLHHLLQQQQQQLQMFWSFQRQEIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEIKDEAGLGGMVGATASGVPYYYPPMGQPAGPPGGMMIGRPAMDPTGVYAQPPSQAWQSVWQPAAEDGSYASGGSSGQGNLDGQR 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 216025 218070 + CmaCh10G000580.1 Cma10g00058 301374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00058 281 MobiDBLite consensus disorder prediction 265 281 - -
Cma10g00058 281 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 65 280 - -
Cma10g00058 281 SUPERFAMILY Histone-fold 87 189 IPR009072 GO:0046982
Cma10g00058 281 Gene3D Histone, subunit A 85 195 IPR009072 GO:0046982
Cma10g00058 281 MobiDBLite consensus disorder prediction 243 281 - -
Cma10g00058 281 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-4 65 280 - -
Cma10g00058 281 MobiDBLite consensus disorder prediction 64 84 - -
Cma10g00058 281 Pfam Core histone H2A/H2B/H3/H4 89 180 IPR007125 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00058 Cma-Chr10:216025 Cma10g01076 Cma-Chr10:6907923 1.38E-68 dispersed
Cma10g00058 Cma-Chr10:216025 Cma11g00030 Cma-Chr11:141365 5.91E-155 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35674 PF00808 CBFD_NFYB_HMF 3.40E-17 CL0012 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00058 - - cmax:111500215 329.717