Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00060 ATGGCGGCGGCTACATCTCCCTGCGCCTCCAAATCCTTCTCCAAATCCTCCTCCTTTATTCTTCCTAAACCCTTCTCCAGATTCGATCTTTCATTTTCCCCTCTTCCTCGCAATCCCATTTTTCGCCGTCCTCTTCGCATCTGCAGCAGCTCTCTCTCAAATCCTTCCCCAAAACCTTCCTCCACCACAGCCTCCGCCCTTGCTGTCGACACTTCCACCATCCCCACTCCTGAGATTTTCGTCTCTCGATTCGCCCCTGATGAACCCAGAAAAGGCGCCGATATCCTCGTCGAGGCTCTCGAGCGCCAAGGCGTCACCGATGTCTTTGCTTACCCCGGCGGCGCGTCCATGGAGATCCATCAGGCCCTCACGCGCTCCCCCACCATCCGTAACGTTCTCCCTCGCCACGAACAGGGCGGGGTATTCGCCGCCGAGGGTTACGCTCGCTCCTCTGGCCTTCCCGGCGTTTGCATTGCAACTTCCGGCCCCGGCGCCACCAATCTGGTCAGCGGCCTTGCCGATGCCCTCCTCGACAGCGTTCCGTTGGTGGCCATTACAGGGCAAGTTCCGAGGAGAATGATCGGTACCGATGCGTTTCAGGAAACTCCCATCGTAGAGGTAACACGCTCTATTACAAAGCACAATTATCTGGTTCTTGATGTAGATGACATTCCTAGGATTGTGAGCGAGGCATTTTTTCTCGCAATTTCTGGTCGTCCTGGTCCTGTTCTTATTGATATTCCCAAAGACGTTCAGCAACAGCTCGCGATTCCTAATTGGAATCGGCCCATGAAATTACCTGGTTACTTGTCTAGATTACCTAAGCCTCCCATTGATTTGCATTTGGAACAAATTGTGCGATTGATCTCTGAATCTAAGAAGCCTGTTCTTTACGTGGGTGGAGGGTGTTTGAATTCGTCAGAGGAGCTGCGGCGGTTTGTCGAGCTGACCGGGATTCCAGTGGCCAGCACTCTGATGGGTCTTGGGGCTTTTCCTTGCTCCGATGACTTGTCTCTGCAAATGCTGGGAATGCACGGGACAGTTTATGCCAACTATGCTGTGGATAAAGCGGACCTGTTGCTTGCATTTGGAGTGCGATTTGATGACCGTGTGACAGGGAAACTTGAGGCCTTTGCAAGCCGTGCGAAGATTGTTCATATCGATATCGATTCTGCCGAGATTGGGAAGAACAAGCAGCCCCATGTATCGGTCTGTGGCGATGTGAAGTTGGCCTTGCAGGGAATGAATTGTTTACTTGAGAAGGTTGAGAAGCCTCACTTTGAATTCTCTGCGTGGAGAGAGGAGCTGAATGAGCAGAAATCGAAGTATCCATTGACTTTCAAGACATTTGATGAGGCCATTCCTCCACAGTATGCAATTCAAGTTCTTGATGAGCTAACCAATGGCGAGGCCATCGTAAGCACAGGGGTGGGGCAGCATCAGATGTGGGCAGCTCAGTTCTACAAGTACAAGAAGCCACGCCAGTGGTTAACCTCTGGCGGGTTAGGTGCAATGGGCTTTGGACTGCCTGCAGCGATGGGGGCAGCAGTAGCAAATCCAGGCGCGATAGTCGTTGACATCGACGGGGATGGGAGTTTCATGATGAATGTCCAAGAACTGGCAACAATCAGTGTTGAGAAACTTCCCGTGAAGATCCTGCTGCTGAACAACCAGCATCTGGGCATGGTTGTGCAGTGGGAGGATCGGTTCTACAAAGCCAACAGAGCTCATACATACCTGGGAGACCCATCAAACGAATCTGAGATATTCCCCAACATGTTGAAGTTTGCAGAGGGATGCGGGATCCCGGCAGCACGTGTGACGAAGAGGGCGGAGTTAAGAGCAGCAATGAAGAAGATGCTGGAGACGGAAGGGCCTTACCTGTTGGATGTGATCGTACCACATCAGGAACATGTGCTGCCGATGATTCCCAGTGGTGGTGCTTTCAAAGATGTGATCACAGAGGGAGATGGAAGATGCGCATACTAA 1989 52.04 MAAATSPCASKSFSKSSSFILPKPFSRFDLSFSPLPRNPIFRRPLRICSSSLSNPSPKPSSTTASALAVDTSTIPTPEIFVSRFAPDEPRKGADILVEALERQGVTDVFAYPGGASMEIHQALTRSPTIRNVLPRHEQGGVFAAEGYARSSGLPGVCIATSGPGATNLVSGLADALLDSVPLVAITGQVPRRMIGTDAFQETPIVEVTRSITKHNYLVLDVDDIPRIVSEAFFLAISGRPGPVLIDIPKDVQQQLAIPNWNRPMKLPGYLSRLPKPPIDLHLEQIVRLISESKKPVLYVGGGCLNSSEELRRFVELTGIPVASTLMGLGAFPCSDDLSLQMLGMHGTVYANYAVDKADLLLAFGVRFDDRVTGKLEAFASRAKIVHIDIDSAEIGKNKQPHVSVCGDVKLALQGMNCLLEKVEKPHFEFSAWREELNEQKSKYPLTFKTFDEAIPPQYAIQVLDELTNGEAIVSTGVGQHQMWAAQFYKYKKPRQWLTSGGLGAMGFGLPAAMGAAVANPGAIVVDIDGDGSFMMNVQELATISVEKLPVKILLLNNQHLGMVVQWEDRFYKANRAHTYLGDPSNESEIFPNMLKFAEGCGIPAARVTKRAELRAAMKKMLETEGPYLLDVIVPHQEHVLPMIPSGGAFKDVITEGDGRCAY 662
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 221001 222989 + CmaCh10G000600.1 Cma10g00060 301376

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00060 662 SUPERFAMILY DHS-like NAD/FAD-binding domain 281 445 IPR029035 -
Cma10g00060 662 Gene3D - 446 632 - -
Cma10g00060 662 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 454 654 IPR029061 -
Cma10g00060 662 Pfam Thiamine pyrophosphate enzyme, N-terminal TPP binding domain 91 254 IPR012001 GO:0030976
Cma10g00060 662 Gene3D - 282 445 - -
Cma10g00060 662 Pfam Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 476 631 IPR011766 GO:0003824|GO:0030976
Cma10g00060 662 Gene3D - 79 273 - -
Cma10g00060 662 PANTHER THIAMINE PYROPHOSPHATE ENZYMES 63 660 IPR045229 -
Cma10g00060 662 ProSitePatterns Thiamine pyrophosphate enzymes signature. 513 532 IPR000399 GO:0000287|GO:0030976
Cma10g00060 662 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 86 267 IPR029061 -
Cma10g00060 662 CDD TPP_AHAS 454 646 IPR039368 GO:0030976
Cma10g00060 662 Pfam Thiamine pyrophosphate enzyme, central domain 283 413 IPR012000 GO:0000287|GO:0030976
Cma10g00060 662 PANTHER ACETOLACTATE SYNTHASE 63 660 - -
Cma10g00060 662 TIGRFAM acolac_lg: acetolactate synthase, large subunit, biosynthetic type 91 654 IPR012846 GO:0000287|GO:0003984|GO:0009082|GO:0030976|GO:0050660
Cma10g00060 662 CDD TPP_PYR_POX_like 94 249 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00060 K01652 E2.2.1.6L, ilvB, ilvG, ilvI; acetolactate synthase I/II/III large subunit [EC:2.2.1.6] - csv:101213339 1195.26
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00060 Cma11g00031 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00409 Cma-Chr1:2068934 Cma10g00060 Cma-Chr10:221001 4.34E-45 dispersed
Cma10g00060 Cma-Chr10:221001 Cma14g00050 Cma-Chr14:217236 4.76E-19 dispersed
Cma04g01566 Cma-Chr4:7950967 Cma10g00060 Cma-Chr10:221001 8.27E-10 transposed
Cma10g00060 Cma-Chr10:221001 Cma11g00031 Cma-Chr11:144613 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g102 . Blo16g00269 . . . Bpe13g00201 Bma06g00260 . . . Cma10g00060 Cma11g00031 . . . . Cpe04g01617 Bhi02g00519 . . . Hepe09g0046 . . Cla06g01743 Cam06g1933 Cec06g1983 Cco06g1988 Clacu06g1889 Cmu06g1831 Cre06g2646 . . Cone13ag0223 . . . . . . . Bda11g01597 . . . . . . Cmo10g00054 Cmo11g00033 . . . . . Cpe18g00907 . . . . . . . . . . . . . . Lsi06g01643 . Chy02g02664 Cme02g02067
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007549 1 1 1 2 1 1 0 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 36
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00060 Cma_Chr10 FPKM 40.24535 42.357704 83.822342 80.837502 92.903023 101.650078 90.60955 66.651054 69.379517 63.786167