Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00065 ATGGCCGCCACCAACACCAATGTCGCCACCGGCGTCGACGACCGCGTCTTGGCCACCGCGCAGCAGATCGTCAAGAGCCTCAATACCCCTAAAGAGGTTCGTGAGGACATGCTCTTGATTCTCTCCAATTTCGATAATCGCCTTTCCAGTATCGGTAGCATGATCAACAGTGACAACACCTCCAACATCGAGAACGATAGGTTGGACGCCGCCGAGAAGGTGATTCTACGTTGGGATCCTAATTCAGATGTACCGAGACCGTCGCTTAATTGGGAGGACTCGCCGGACGAGGCGGCTGAATATTTATCTGCGGTGGATGATATACTCCGGCTAGTTGAAGACCTGTCAATTGGGTCCGAGTCGATCAAGATCGTTGGCCGGGCGGAAAACGCGATCCAAATGGCGATGTGTCGGCTCGAGAGCGAATTTCGTCATATCCTGATCCAGAGCACAGTTCCTCTCGACGCCGATCGGCTCTACGGCTCGATCCGAAGAGTTCACCTCTCATTTGCGTCCCATTACAGTGAAATTGACGACGAATTCGAGAGTTTCGGCGAGGAAAGTCGCAATTCCGGGCGATTCCATGAGCGAGGTGCGACAATTGGAGAAGATTCGTGGGTCGATTTGATCCATCCCGATGCGGCTGTTGATCTCTCGGAAATTGCGGACCGTATGATTCGCTCTGGCTACGAAAAGGAGTGTGTTCAAGTCTACAGCACCGTTCGTCGCGATGCTTTGGACGAGTGTTTGGCAATTCTTGGCGTCGAACGGCTCAGCATTGAGGAGGTTCAGAAAAGTGACTGGAAATTTCTAGACGAGAAGATGAAGAAATGGATCCAGGCCGTCAAAATTACTGTCCGGTTGATTTTGGTCGGTGAGAAGAGGCTGTGTGACCAGATTTTTAATGGCGCCAATGAATCCCAGGAGATTTGTTTTAACGAAACAGCAAAAGGGTGTGTAATGCAGCTGCTAAATTTCGGTGAGGCAGTGGCTATTGGGAAGAGGTCACCGGAGAAGCTGTTCCGAATCTTGGATATGTATGACGCTCTGGCTGGCGTTTTGCCACACTTGGAAGCCATGGTTTCCGATGAGTTTCTGATCAGTGAAGTACACGGAGTATTGTCTGGACTGGGAGAAGCAGCCACGGGAACTTTTGTGGAGTTTGAGAATGCTATTCTTAGCGAAAATTCAAAGAAAGCAATGCAAAATGCCGATATTCACCCGCTCATTCGATATGTAATGAATTACGTTAGGCTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGATGAGGAAGAACAAGACATGCCAAATGAGAAAGATAACGATGATATACTGCAGTTGGAAAGCAAGTCGCCTTTGGCTCGTCGATTGTTCATGTTGTTATCGTCTCTGGAGTCCAATCTTGTGGAAAAATCTAAATTTTATGAGGATGTTTCTATGCAGTTCATATTCCTAATGAACAATATACTGTACATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAGCTGCTTGGCGATAACTGGCTTCGCAGGCGTAGCGGCCAAATTCGCCAATATGAAACTAGTTACCTTAGAGCCTCTTGGAGCAAAGTCTTGTCTTGCTTAAAGGATGAAGGCATTGGTGGGAGCCCAAGCAACGCCTCCAAGGTAGCTTTGAAGGAGAAGTTCAAGAATTTCAATGCAAGTTTTGAGGAAATCTGCAGGGTTCAAACAGCTTGGAAGGTGTCGGATACTCAACTGCGCGATGAGCTGATCATATCGGTTTCGGAGAAGGTGATTCCTGCGTACCGCTCCTTCTTAGGAAGGTTTAGAAATCAGTTAGAGAGCGGAAGGCATTCTGGGAAGTACATAAAGTACACGCCAGAGGATTTAGAGAACTCTCTATCAGATTTGTTTGAAGGATCACTTGCTGTATCACATCACTTGCGAAGAAAGAGTACTTGA 1959 47.42 MAATNTNVATGVDDRVLATAQQIVKSLNTPKEVREDMLLILSNFDNRLSSIGSMINSDNTSNIENDRLDAAEKVILRWDPNSDVPRPSLNWEDSPDEAAEYLSAVDDILRLVEDLSIGSESIKIVGRAENAIQMAMCRLESEFRHILIQSTVPLDADRLYGSIRRVHLSFASHYSEIDDEFESFGEESRNSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILVGEKRLCDQIFNGANESQEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPHLEAMVSDEFLISEVHGVLSGLGEAATGTFVEFENAILSENSKKAMQNADIHPLIRYVMNYVRLLVDYSKTMNSLLEDEEEQDMPNEKDNDDILQLESKSPLARRLFMLLSSLESNLVEKSKFYEDVSMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRRSGQIRQYETSYLRASWSKVLSCLKDEGIGGSPSNASKVALKEKFKNFNASFEEICRVQTAWKVSDTQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRHSGKYIKYTPEDLENSLSDLFEGSLAVSHHLRRKST 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 249523 251481 + CmaCh10G000650.1 Cma10g00065 301381

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00065 652 Pfam Exo70 exocyst complex subunit 276 635 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma10g00065 652 Gene3D Exocyst complex component Exo70 87 645 - -
Cma10g00065 652 SUPERFAMILY Cullin repeat-like 69 638 IPR016159 -
Cma10g00065 652 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 50 651 - -
Cma10g00065 652 PANTHER EXOCYST COMPLEX PROTEIN EXO70 50 651 IPR004140 GO:0000145|GO:0006887
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00065 K07195 EXOC7, EXO70; exocyst complex component 7 - csv:101205970 1127.46
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00065 Cma18g00319 CCT
Cma10g00065 Cma13g00803 CCT
Cma10g00065 Cma11g00035 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00065 Cma-Chr10:249523 Cma14g01199 Cma-Chr14:9583679 6.29E-149 dispersed
Cma18g00955 Cma-Chr18:8137003 Cma10g00065 Cma-Chr10:249523 1.16E-115 dispersed
Cma01g00449 Cma-Chr1:2254957 Cma10g00065 Cma-Chr10:249523 1.50E-142 transposed
Cma10g00065 Cma-Chr10:249523 Cma11g00035 Cma-Chr11:162015 0 wgd
Cma10g00065 Cma-Chr10:249523 Cma13g00803 Cma-Chr13:6823642 0 wgd
Cma10g00065 Cma-Chr10:249523 Cma18g00319 Cma-Chr18:1702191 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g116 . Blo16g00265 . . Bpe12g00483 Bpe13g00204 Bma06g00256 . Cmo13g00835 . Cma10g00065 Cma11g00035 Car10g00053 Car11g00032 . Cpe20g00308 Cpe04g01614 . . . . . . . . . . . . . . . . . Cone19ag0206 . . Chy12g01170 Cme12g01592 . . Bda11g01602 Bda14g01366 . Bpe15g00216 Bma03g01256 . Sed08g2438 Cmo10g00061 Cmo11g00037 Cma13g00803 Cma18g00319 Car13g00651 Car18g00228 Cpe09g00962 . Bhi08g01486 Tan05g2961 Cmetu04g0927 Lac10g0582 Hepe07g2107 . . Cla03g00352 Cam03g0370 Cec03g0358 Cco03g0373 Clacu03g0370 Cmu03g0976 Cre03g0668 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00955 . 28 671 EXO70 exocyst subunit family AT5G03540 76.9 1.0e-286 983.0
Cma04g01443 . 56 697 EXO70 exocyst subunit family AT5G03540 74.7 5.7e-277 950.7
Cma07g00826 . 1 639 EXO70 exocyst subunit family AT5G03540 68.6 2.8e-255 878.6
Cma03g01120 . 1 636 EXO70 exocyst subunit family AT5G03540 68.7 3.1e-254 875.2
Cma07g00826 . 1 639 EXO70 exocyst subunit family AT5G52340 75.7 3.5e-284 974.5
Cma03g01120 . 1 636 EXO70 exocyst subunit family AT5G52340 76.5 7.9e-284 973.4
Cma18g00955 . 30 671 EXO70 exocyst subunit family AT5G52340 74.0 4.5e-271 931.0
Cma04g01443 . 58 697 EXO70 exocyst subunit family AT5G52340 73.4 5.5e-269 924.1
Cma07g00826 . 145 632 EXO70 exocyst subunit family AT5G52350 61.5 4.6e-169 592.0
Cma03g01120 . 145 629 EXO70 exocyst subunit family AT5G52350 62.1 6.0e-169 591.7
Cma04g01443 . 193 697 EXO70 exocyst subunit family AT5G52350 58.5 1.4e-165 580.5
Cma18g00955 . 165 671 EXO70 exocyst subunit family AT5G52350 58.9 1.4e-165 580.5
Cma01g00707 CST 1 624 EXO70 exocyst subunit family AT5G58430 65.7 3.7e-241 831.6
Cma13g00032 CST 1 625 EXO70 exocyst subunit family AT5G58430 64.9 9.0e-240 827.0
Cma13g00032 CST 1 624 EXO70 exocyst subunit family AT1G07000 51.7 4.1e-173 605.5
Cma01g00707 CST 1 623 EXO70 exocyst subunit family AT1G07000 50.9 1.1e-170 597.4
Cma06g01676 . 58 671 EXO70 exocyst subunit family AT5G13150 52.2 2.3e-169 593.2
Cma14g01446 . 61 675 EXO70 exocyst subunit family AT5G13150 51.6 1.4e-166 583.9
Cma04g02280 . 81 682 EXO70 exocyst subunit family AT5G13990 53.7 5.4e-185 645.2
Cma15g00757 . 94 700 EXO70 exocyst subunit family AT5G13990 52.5 1.9e-182 636.7
Cma14g01199 . 12 611 EXO70 exocyst subunit family AT1G72470 63.7 1.6e-212 736.5
Cma01g00010 . 9 593 EXO70 exocyst subunit family AT1G72470 60.3 6.8e-195 677.9
Cma14g01199 . 12 609 EXO70 exocyst subunit family AT1G54090 62.0 2.0e-207 719.5
Cma01g00010 . 9 593 EXO70 exocyst subunit family AT1G54090 59.1 1.8e-192 669.8
Cma14g01199 . 9 610 EXO70 exocyst subunit family AT3G14090 63.0 4.1e-216 748.4
Cma01g00010 . 9 593 EXO70 exocyst subunit family AT3G14090 61.5 6.3e-201 698.0
Cma11g00035 CCT,CST,ECH 14 648 EXO70 exocyst subunit family AT5G50380 63.3 1.7e-228 789.6
Cma13g00803 CCT,CST 17 655 EXO70 exocyst subunit family AT5G50380 62.3 9.6e-227 783.9
Cma10g00065 CCT,CST 13 651 EXO70 exocyst subunit family AT5G50380 61.8 1.6e-226 783.1
Cma18g00319 CCT,CST 19 658 EXO70 exocyst subunit family AT5G50380 61.9 1.7e-223 773.1
Cma12g00298 . 15 682 EXO70 exocyst subunit family AT4G31540 73.0 2.5e-291 998.4
Cma05g00623 . 13 682 EXO70 exocyst subunit family AT4G31540 73.2 1.6e-290 995.7
Cma04g01215 . 24 610 EXO70 exocyst subunit family AT2G39380 50.3 2.8e-148 523.1
Cma14g00174 . 26 630 EXO70 exocyst subunit family AT3G09520 55.3 6.8e-179 624.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001393 4 1 3 4 4 2 4 2 2 2 2 2 4 2 2 3 2 2 4 2 2 2 2 2 2 2 2 4 2 1 74
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00065 Cma_Chr10 FPKM 7.18734 9.357537 11.034732 10.22603 7.940774 7.956362 7.619275 15.363401 12.476221 12.719321