Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00065 ATGGCCGCCACCAACACCAATGTCGCCACCGGCGTCGACGACCGCGTCTTGGCCACCGCGCAGCAGATCGTCAAGAGCCTCAATACCCCTAAAGAGGTTCGTGAGGACATGCTCTTGATTCTCTCCAATTTCGATAATCGCCTTTCCAGTATCGGTAGCATGATCAACAGTGACAACACCTCCAACATCGAGAACGATAGGTTGGACGCCGCCGAGAAGGTGATTCTACGTTGGGATCCTAATTCAGATGTACCGAGACCGTCGCTTAATTGGGAGGACTCGCCGGACGAGGCGGCTGAATATTTATCTGCGGTGGATGATATACTCCGGCTAGTTGAAGACCTGTCAATTGGGTCCGAGTCGATCAAGATCGTTGGCCGGGCGGAAAACGCGATCCAAATGGCGATGTGTCGGCTCGAGAGCGAATTTCGTCATATCCTGATCCAGAGCACAGTTCCTCTCGACGCCGATCGGCTCTACGGCTCGATCCGAAGAGTTCACCTCTCATTTGCGTCCCATTACAGTGAAATTGACGACGAATTCGAGAGTTTCGGCGAGGAAAGTCGCAATTCCGGGCGATTCCATGAGCGAGGTGCGACAATTGGAGAAGATTCGTGGGTCGATTTGATCCATCCCGATGCGGCTGTTGATCTCTCGGAAATTGCGGACCGTATGATTCGCTCTGGCTACGAAAAGGAGTGTGTTCAAGTCTACAGCACCGTTCGTCGCGATGCTTTGGACGAGTGTTTGGCAATTCTTGGCGTCGAACGGCTCAGCATTGAGGAGGTTCAGAAAAGTGACTGGAAATTTCTAGACGAGAAGATGAAGAAATGGATCCAGGCCGTCAAAATTACTGTCCGGTTGATTTTGGTCGGTGAGAAGAGGCTGTGTGACCAGATTTTTAATGGCGCCAATGAATCCCAGGAGATTTGTTTTAACGAAACAGCAAAAGGGTGTGTAATGCAGCTGCTAAATTTCGGTGAGGCAGTGGCTATTGGGAAGAGGTCACCGGAGAAGCTGTTCCGAATCTTGGATATGTATGACGCTCTGGCTGGCGTTTTGCCACACTTGGAAGCCATGGTTTCCGATGAGTTTCTGATCAGTGAAGTACACGGAGTATTGTCTGGACTGGGAGAAGCAGCCACGGGAACTTTTGTGGAGTTTGAGAATGCTATTCTTAGCGAAAATTCAAAGAAAGCAATGCAAAATGCCGATATTCACCCGCTCATTCGATATGTAATGAATTACGTTAGGCTGCTGGTTGATTACAGTAAGACAATGAACTCTCTTTTAGAAGATGAGGAAGAACAAGACATGCCAAATGAGAAAGATAACGATGATATACTGCAGTTGGAAAGCAAGTCGCCTTTGGCTCGTCGATTGTTCATGTTGTTATCGTCTCTGGAGTCCAATCTTGTGGAAAAATCTAAATTTTATGAGGATGTTTCTATGCAGTTCATATTCCTAATGAACAATATACTGTACATAGTGAAAAAGGTGAAAGATTCTGAGCTTGCCCAGCTGCTTGGCGATAACTGGCTTCGCAGGCGTAGCGGCCAAATTCGCCAATATGAAACTAGTTACCTTAGAGCCTCTTGGAGCAAAGTCTTGTCTTGCTTAAAGGATGAAGGCATTGGTGGGAGCCCAAGCAACGCCTCCAAGGTAGCTTTGAAGGAGAAGTTCAAGAATTTCAATGCAAGTTTTGAGGAAATCTGCAGGGTTCAAACAGCTTGGAAGGTGTCGGATACTCAACTGCGCGATGAGCTGATCATATCGGTTTCGGAGAAGGTGATTCCTGCGTACCGCTCCTTCTTAGGAAGGTTTAGAAATCAGTTAGAGAGCGGAAGGCATTCTGGGAAGTACATAAAGTACACGCCAGAGGATTTAGAGAACTCTCTATCAGATTTGTTTGAAGGATCACTTGCTGTATCACATCACTTGCGAAGAAAGAGTACTTGA 1959 47.42 MAATNTNVATGVDDRVLATAQQIVKSLNTPKEVREDMLLILSNFDNRLSSIGSMINSDNTSNIENDRLDAAEKVILRWDPNSDVPRPSLNWEDSPDEAAEYLSAVDDILRLVEDLSIGSESIKIVGRAENAIQMAMCRLESEFRHILIQSTVPLDADRLYGSIRRVHLSFASHYSEIDDEFESFGEESRNSGRFHERGATIGEDSWVDLIHPDAAVDLSEIADRMIRSGYEKECVQVYSTVRRDALDECLAILGVERLSIEEVQKSDWKFLDEKMKKWIQAVKITVRLILVGEKRLCDQIFNGANESQEICFNETAKGCVMQLLNFGEAVAIGKRSPEKLFRILDMYDALAGVLPHLEAMVSDEFLISEVHGVLSGLGEAATGTFVEFENAILSENSKKAMQNADIHPLIRYVMNYVRLLVDYSKTMNSLLEDEEEQDMPNEKDNDDILQLESKSPLARRLFMLLSSLESNLVEKSKFYEDVSMQFIFLMNNILYIVKKVKDSELAQLLGDNWLRRRSGQIRQYETSYLRASWSKVLSCLKDEGIGGSPSNASKVALKEKFKNFNASFEEICRVQTAWKVSDTQLRDELIISVSEKVIPAYRSFLGRFRNQLESGRHSGKYIKYTPEDLENSLSDLFEGSLAVSHHLRRKST 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 249523 251481 + CmaCh10G000650.1 Cma10g00065 301381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00065 652 Pfam Exo70 exocyst complex subunit 276 635 IPR046364 GO:0000145|GO:0005546|GO:0006887
Cma10g00065 652 Gene3D Exocyst complex component Exo70 87 645 - -
Cma10g00065 652 SUPERFAMILY Cullin repeat-like 69 638 IPR016159 -
Cma10g00065 652 PANTHER EXOCYST SUBUNIT EXO70 FAMILY PROTEIN 50 651 - -
Cma10g00065 652 PANTHER EXOCYST COMPLEX PROTEIN EXO70 50 651 IPR004140 GO:0000145|GO:0006887
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00065 Cma18g00319 CCT
Cma10g00065 Cma13g00803 CCT
Cma10g00065 Cma11g00035 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00065 Cma-Chr10:249523 Cma14g01199 Cma-Chr14:9583679 6.29E-149 dispersed
Cma18g00955 Cma-Chr18:8137003 Cma10g00065 Cma-Chr10:249523 1.16E-115 dispersed
Cma01g00449 Cma-Chr1:2254957 Cma10g00065 Cma-Chr10:249523 1.50E-142 transposed
Cma10g00065 Cma-Chr10:249523 Cma11g00035 Cma-Chr11:162015 0 wgd
Cma10g00065 Cma-Chr10:249523 Cma13g00803 Cma-Chr13:6823642 0 wgd
Cma10g00065 Cma-Chr10:249523 Cma18g00319 Cma-Chr18:1702191 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00065 K07195 - csv:101205970 1127.46