Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00066 ATGGTGATGGCAGCGACAGAGGAGAGTCCGAGAAGCCCAGAGGCGAAGGTGGGGATGCGAGTGGAAGATTTATGGGACGTTCAAGAGCCGCAGCTCAGTCCCACTGAAAAGCTTAATGCTTGCTTTGAAAGCATCCCCGTCTCTACCTTTCCTCCTGCCCCTCTTAATCAAGTAATTGAGATAAAATCGGATAGCAGTCTAGCTGAAGCTGTTCAAATTTTGGCCCAACATAAGATCCTCAGTGCACCGGTGGTGGACGTTGACGCACCTGATCATGCAAGCTGGATTGATAGATACCTTGGAGTCGTTGAGTTTGCTGGAATTGCCGTTTGGATTCTTTATCAGTCGGAACCTCCATCCCCGAGAAGTCCTAGTGATGGAAGTGCTGTGGCGGCGGCAAGAAATGGGGTGATATCTCCTTTAGAACAGCAGGTACTCGGCCCTGAATCCGCTGCAGTGACGTCGGGAAGCTTTTTCGAGTCGTTAACTTCCTCTGAATTGTACAAGAGCACACAGGTGCGAGATATCTCGGGATCTTTCCGTTGGGCGCCATTTCTTGCGTTGCAGACGTCGAATTCCTTCTTGACAATGCTGTTACTGCTATCAAAGTACAAAATGAAAAGCATACCAGTGGTGGACTTGGGGGAGGGAAAGATTGAGAACATCATTACACAATCAGCTGTGATTCACATGTTAGCAGAATGTGCAGGGCTTCAGTGGTTCGAAAGTTGGGGAACAAAGACGCTCTCGGAGCTCGGTCTTCCGATGATGTCGCCGGCTTCTATTGTCAAGGTGTACGAGGACGAGCCTGTTCTTCAAGCATTCAAACTTATGAGGAAGAAGAAGGTTGGAGGTATACCTGTTATTGAAAAGGGTGGGAGCAAGGCTGTAGGCAACATTAGTTTAAGAGATATTCATTTCTTGCTCACTGCACCAGAAATCTACCACGATTACAGATCGATAACGGCCAGGAACTTTCTGACTGCGGTTAGAAGCTACTTAGAGAAGCATGAAGCGTTCTCTCCTATGCTGAGCGACATGATTGCGTGCAAGAAGGATCACTCTGTAAAGGATTTGATTTTGATGCTCGACTCGAAGAAGATCCACCGTGTGTATGTAGTCGACGACAATGGCAATCTGGAAGGAGTTGTCACCCTCAGAGATATCATCTCGAGGTTAGTCCATGAACCTCGCGGTTACTTTGGCGATTTCTTCGACGGTGTTCTACCATTGCCTGAGAATAGTCGGGTTTGA 1254 47.93 MVMAATEESPRSPEAKVGMRVEDLWDVQEPQLSPTEKLNACFESIPVSTFPPAPLNQVIEIKSDSSLAEAVQILAQHKILSAPVVDVDAPDHASWIDRYLGVVEFAGIAVWILYQSEPPSPRSPSDGSAVAAARNGVISPLEQQVLGPESAAVTSGSFFESLTSSELYKSTQVRDISGSFRWAPFLALQTSNSFLTMLLLLSKYKMKSIPVVDLGEGKIENIITQSAVIHMLAECAGLQWFESWGTKTLSELGLPMMSPASIVKVYEDEPVLQAFKLMRKKKVGGIPVIEKGGSKAVGNISLRDIHFLLTAPEIYHDYRSITARNFLTAVRSYLEKHEAFSPMLSDMIACKKDHSVKDLILMLDSKKIHRVYVVDDNGNLEGVVTLRDIISRLVHEPRGYFGDFFDGVLPLPENSRV 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 252314 254466 - CmaCh10G000660.1 Cma10g00066 301382

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00066 417 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT GAMMA 1-RELATED 3 417 - -
Cma10g00066 417 SUPERFAMILY CBS-domain pair 30 233 IPR046342 -
Cma10g00066 417 SUPERFAMILY CBS-domain pair 255 403 IPR046342 -
Cma10g00066 417 ProSiteProfiles CBS domain profile. 257 318 IPR000644 -
Cma10g00066 417 SMART cbs_1 346 394 IPR000644 -
Cma10g00066 417 SMART cbs_1 261 310 IPR000644 -
Cma10g00066 417 SMART cbs_1 184 233 IPR000644 -
Cma10g00066 417 SMART cbs_1 57 113 IPR000644 -
Cma10g00066 417 Gene3D - 37 239 IPR046342 -
Cma10g00066 417 CDD CBS_pair_SF 262 390 - -
Cma10g00066 417 Pfam CBS domain 343 394 IPR000644 -
Cma10g00066 417 Pfam CBS domain 257 305 IPR000644 -
Cma10g00066 417 ProSiteProfiles CBS domain profile. 52 120 IPR000644 -
Cma10g00066 417 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 3 417 - -
Cma10g00066 417 Gene3D - 245 396 IPR046342 -
Cma10g00066 417 ProSiteProfiles CBS domain profile. 343 401 IPR000644 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00066 - - - csv:101214786 735.332
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00066 Cma11g00036 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01636 Cma-Chr4:8253751 Cma10g00066 Cma-Chr10:252314 1.19E-86 dispersed
Cma10g00066 Cma-Chr10:252314 Cma18g01170 Cma-Chr18:9376211 3.79E-86 dispersed
Cma10g00066 Cma-Chr10:252314 Cma11g00036 Cma-Chr11:164586 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g117 . . Bda06g00730 . Bpe12g00484 . . . . . Cma10g00066 Cma11g00036 Car10g00054 Car11g00033 . . Cpe04g01613 Bhi02g00681 . . . . . . Cla06g01738 Cam06g1928 . Cco06g1982 Clacu06g1884 . Cre06g2641 . . Cone13ag0216 Cone19ag0205 . . . . . Blo15g00210 . . . . . . . Cmo10g00062 Cmo11g00038 . . . . . . . . . . . . . . . . . . . . Lsi06g01638 Csa01g00060 Chy02g02659 Cme02g02061
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003995 2 1 2 1 2 1 2 1 0 2 1 1 2 2 2 2 0 2 2 1 2 1 1 1 1 0 1 4 2 1 43
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00066 Cma_Chr10 FPKM 38.186974 42.542774 137.692123 138.893417 23.301226 21.728575 20.502159 96.63929 94.022064 93.470901