Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00072 ATGCAGCACAGAATTCATGAGTCAGAAATTGTAAGTCGTTCATATCTGCTCTTTTGTGAAGCGCCACCGGCTCCTCTGCCACCGTTTCAGCAAAGGCTCATCACAAGCTTCCCGCTTCATCCCCATCCACTCCTTTCTCTTTCACCGCTCTTTCAATTCAGTACGCAAAATCGCCTCCTCGGCTTGGTTAAACCATCCAATTTCTTCGTCGTGCCCTTACCAAGAGCTGGGAGAAGCCGACGAGAGAGATACGGGTGTGAGGTTGTTTGCTTCACTGCTGATGTTGGGCAAGGAGTGATGGAATTGGATGGTTTGGAAGCGAAGGCCAAAGCAAGCGGAGCCTGTCAACTTGTTGTGAAAGACCTGAGGGATGAATTCGTTGAAGACTACGTGTTTCCATGCTTGCGAGCTGGTGCCATTTATGAGAGGAAATACTTGCTTGGCACTTCCATGGCTCGCCCTGTCATCGCCAAGGCCATGGTGGATGTTGCCAAACAAGTTGGAGCTGATGCTGTTGCTCATGGTTGCACAGGGAAAGGGAATGATCAGGTACGAGAATGGGACATTACTGGAAGAGAAGATGCCGTTGAATATGCCAAGAGGCATAACGTGCCCGTCCCCGTCACGAAGAAATCGATATACAGTCGAGACCGGAATATTTGGCACCTTAGTCATGAGGGTGACGTTTTGGAAGATCCTGCTAATGAGCCAAAGAAGGACATGTTCATGATGTCTGTTGATCCCGAGGCTGCTCCGAACCAACCCGAATATGTTGAGATTGATTTTGTCTCGGGACTTCCTGTTGCTGTCAATGGAAAAAGGCTGTCACCAGCTTCCCTTCTTGACCACCTCAACGAGATTGGCGGGAAACACGGCATCGGCCGAGTCGACATGGTCGAAAACCGCCTCGTTGGCATGAAGAGCCGAGGTGTGTATGAAACACCAGGAGGAACCATCCTATTCACAGCTGCGCGAGAGCTTGAGTTCTTAACACTCGACCGCGAGACCATACAAGTCAAGGACTCACTTGCCCTCAAGTATGCGGAACTGGTGTACGCAGGCCGATGGTTCGACCCACTACGAGTAGCCATGGATGGATTCATGGAGAAAATAACCGCAACAACAAGTGGAAGGGTCAGGCTCAAGCTGTACAAAGGTTCGGCGACCGTGGCTGGGCTCAAAAGCCCGAACAGCCTGTACAGGCAAGACATATCCTCATTTGAGAACGGGGATGTCTACAACCAGGCTGATGCTGCTGGGTTCATTCATCTCTACGGCCTCCCAACCAGGCGTCTCTCTGGTTTTGCTCCCATGACGTCGACGTATCTTCTATATGAATCTGCTTCTGGTTATGCTCTGTTTCATGCCCATGGTCTCGACGAAATTGGGCAGAATACTGAAGCCGTTCGGAGCTCCGTCTCCGACCTTAACCGCTTCGGCAAGGTCGTGAAGCTTGCTGCTTTTCACCCCTTTGAGTCGGCTCTCGATGCGCTCAAGCAGTGCAACTCGGTCTCCGAAGGGCTCATGACTGATGAGCTTAGGAGTTTTCTGGAAATTAACCTTCCAAAAGTAAAGGAAGGCAAAAAGGCCAAGTTCGTTTTGGGACTAGCTGAACCCAAAATTGGTTCTAACATATTTGAAGAGACTAAAATCCCATGCCAAAGCAATGAGTTCGTTCTGGAGCTGCTTCGCGGTGTGCGACTACACTTCGACAAATTTATCAAGGACCTCAAGACGGGGGATTTGGAGAAAGCCCAACTTGGTCTGGGACACAGTTACAGTCGAGCAAAGGTCAAGTTCAATGTTAACCGTGTTGATAACATGGTGATTCAAGCTATCTTCCTTCTTGACACTCTAGACAAGGACATTAATTCCTTCTCCATGAGAGTCAGAGAATGGTATTCCTGGCATTTCCCGGAGTTGGTGAAGATTGTCAGTGACAATTATCTTTATGCTAAAGTTTCTAAATTCATCGAGGACAAATCAAAGTTGGCTGAAGATAAAATCCCTGCCTTGACTGATATTATTGGTGATGAAGATAAAGCAAAGGAGATTGTTGAAGCAGCTAAAGCCTCCATGGGCCAGGATTTGTCTCCTATTGACTTGATTAATGTCCAGCAATTTGCACAGAGGGTGATGGATCTATCTGAATACAGGAAGAAGCTTTTTGATTATCTAGTTGCTAAAATGAATGATATTGCTCCCAATTTGGCCTCTTTGATTGGTGAAGTTGTTGGGGCCCGTTTAATTTCTCATGCTGGTAGTCTCACAAATTTGGCCAAGTGCCCTTCTTCCACCCTTCAGATTCTCGGTGCTGAGAAAGCACTCTTCAGGGCTTTGAAGACAAAAGGAAACACTCCTAAATATGGTCTGATCTTTCATTCTTCTTTCATTGGGCGAGCATCTGCACGGAACAAAGGTCGAATGGCTCGTTATCTTGCAAACAAATGTTCTATTGCATCACGTATTGATTGCTTTGCAGAGAATAGTACCACAACCTTTGGAGAGAAACTTCGTGAGCAAGTTGAAGAGCGCCTTGACTTTTATGACAAGGGAATAGCACCTCGTAAAAACATAGATGTTATGAAATCTGCAATTGAAAGTGCTGATAACAAAGCAACTGATATGGACATAGAAGAAGTGGCAAGTGAAGCTTCAGGGAAAAAGAGCAAGAAAAAGAAATCAAAAGCTAGTGCGAACGGTGAGGTTGAGGACAGACCAAGTGCCACTGAAAACGGTGACGCGAAATCAGAAAAGAAGAAGAAGAAGGAGAAGCGAAAGTTGGATAAGGAATCAGAGGAGGAGCAGCAGCAGGCTTCAGAAATGTTAAATGGAGAAGTAAACGGGGAGGAAGAAGCAGGCAAGAAGAAGAAGAAGAAAAAGAAGAGCAAGGAGGAGGATCATGTTGCTGCAGAAGATAGTAAGAAGAAAAAGAAGAAGTCGAAAAGCGAAGATGCCGAATAG 2964 46.73 MQHRIHESEIVSRSYLLFCEAPPAPLPPFQQRLITSFPLHPHPLLSLSPLFQFSTQNRLLGLVKPSNFFVVPLPRAGRSRRERYGCEVVCFTADVGQGVMELDGLEAKAKASGACQLVVKDLRDEFVEDYVFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKQVGADAVAHGCTGKGNDQVREWDITGREDAVEYAKRHNVPVPVTKKSIYSRDRNIWHLSHEGDVLEDPANEPKKDMFMMSVDPEAAPNQPEYVEIDFVSGLPVAVNGKRLSPASLLDHLNEIGGKHGIGRVDMVENRLVGMKSRGVYETPGGTILFTAARELEFLTLDRETIQVKDSLALKYAELVYAGRWFDPLRVAMDGFMEKITATTSGRVRLKLYKGSATVAGLKSPNSLYRQDISSFENGDVYNQADAAGFIHLYGLPTRRLSGFAPMTSTYLLYESASGYALFHAHGLDEIGQNTEAVRSSVSDLNRFGKVVKLAAFHPFESALDALKQCNSVSEGLMTDELRSFLEINLPKVKEGKKAKFVLGLAEPKIGSNIFEETKIPCQSNEFVLELLRGVRLHFDKFIKDLKTGDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWYSWHFPELVKIVSDNYLYAKVSKFIEDKSKLAEDKIPALTDIIGDEDKAKEIVEAAKASMGQDLSPIDLINVQQFAQRVMDLSEYRKKLFDYLVAKMNDIAPNLASLIGEVVGARLISHAGSLTNLAKCPSSTLQILGAEKALFRALKTKGNTPKYGLIFHSSFIGRASARNKGRMARYLANKCSIASRIDCFAENSTTTFGEKLREQVEERLDFYDKGIAPRKNIDVMKSAIESADNKATDMDIEEVASEASGKKSKKKKSKASANGEVEDRPSATENGDAKSEKKKKKEKRKLDKESEEEQQQASEMLNGEVNGEEEAGKKKKKKKKSKEEDHVAAEDSKKKKKKSKSEDAE 987
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 283159 291286 + CmaCh10G000720.1 Cma10g00072 301388

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00072 987 Pfam snoRNA binding domain, fibrillarin 615 847 IPR002687 -
Cma10g00072 987 MobiDBLite consensus disorder prediction 964 987 - -
Cma10g00072 987 Gene3D Argininosuccinate synthetase, chain A, domain 2 215 436 IPR024074 GO:0004055
Cma10g00072 987 ProSiteProfiles Nop domain profile. 733 851 IPR002687 -
Cma10g00072 987 PANTHER BNACNNG34340D PROTEIN 440 968 - -
Cma10g00072 987 MobiDBLite consensus disorder prediction 896 937 - -
Cma10g00072 987 Pfam Arginosuccinate synthase 82 430 IPR001518 GO:0004055|GO:0005524|GO:0006526
Cma10g00072 987 SUPERFAMILY Nop domain 601 850 IPR036070 -
Cma10g00072 987 SMART NOSIC_2 608 660 IPR012976 -
Cma10g00072 987 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 81 206 - -
Cma10g00072 987 MobiDBLite consensus disorder prediction 881 987 - -
Cma10g00072 987 Gene3D HUPs 76 214 IPR014729 -
Cma10g00072 987 Hamap Argininosuccinate synthase [argG]. 40 437 IPR023434 GO:0004055
Cma10g00072 987 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 211 431 IPR024074 GO:0004055
Cma10g00072 987 Gene3D Nop domain 737 860 IPR042239 -
Cma10g00072 987 Pfam NOP5NT (NUC127) domain 442 507 IPR012974 -
Cma10g00072 987 TIGRFAM argG: argininosuccinate synthase 82 431 IPR001518 GO:0004055|GO:0005524|GO:0006526
Cma10g00072 987 Coils Coil 918 941 - -
Cma10g00072 987 CDD Argininosuccinate_Synthase 81 428 IPR023434 GO:0004055
Cma10g00072 987 Gene3D - 578 736 - -
Cma10g00072 987 PANTHER NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58 440 968 IPR045056 GO:0030515|GO:0031428|GO:0032040
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00072 K14564 NOP56; nucleolar protein 56 - csv:101216223 902.894
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00072 Cma-Chr10:283159 Cma12g01101 Cma-Chr12:8716865 1.50E-106 dispersed
Cma11g01239 Cma-Chr11:8174407 Cma10g00072 Cma-Chr10:283159 0 transposed
Cma10g00072 Cma-Chr10:283159 Cma11g00044 Cma-Chr11:193856 0 wgd
Cma10g00072 Cma-Chr10:283159 Cma13g00797 Cma-Chr13:6783771 0 wgd
Cma10g00072 Cma-Chr10:283159 Cma18g00228 Cma-Chr18:1230716 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g142 . . Bda06g00736 . . . . Bma12g01076 . . Cma10g00072 . Car10g00060 . . . . Bhi02g00536 . . . Hepe09g0060 . . Cla06g01731 Cam06g1922 Cec06g1972 Cco06g1976 Clacu06g1878 Cmu06g1820 Cre06g2635 . . Cone13ag0211 Cone19ag0200 . . . . . Blo15g00215 . . Bpe07g00883 . . . . Cmo10g00069 . . . . . . . . . . . . . . . . . . . . . Lsi06g01631 Csa01g00068 Chy02g02652 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001306 1 3 2 2 1 3 4 2 2 3 2 2 4 2 3 5 3 2 4 3 3 2 2 2 2 3 2 3 2 2 76
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00072 Cma_Chr10 FPKM 42.729553 44.386486 40.467743 39.11972 56.389034 55.112331 60.900558 66.690712 66.625679 70.393341