Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00073 ATGCCCAGTAGTTCTGGATCAGCGAGATTAGAAGATGTCCCCTCCATCGATCTCATGTCCGAGCTCCTCCGTCGCATGAAGTGCGCTTCAAAATCCGACAAGCGCCTCATTCTCATTGGTCCACCTGGATCAGGAAAAGGCACCCAATCGCCAATCATCAAGGATGAATACTGCTTGTGTCACTTGGCTACTGGTGATATGTTAAGAGCTGCTGTTGCTGCAAAAACCCCACTTGGCGTCAAGGCTAAGGAGGCTATGGACAACGGTGGACTTGTGTCTGATGACTTGGTTGTTGGCATCATAGATGAAGCAGTCAAGAAGCCTTCATGTCAGAAAGGTTTCATTCTTGATGGATTTCCTAGAACAGTGGTCCAAGCACAGAAGCTCGATCAGATGCTAGAAAAGCAGGGTACTAAAATTGATACGGTGCTTAACTTTTCCATTGATGATGCGATCTTGGAGGAGAGGATTACAGGACGATGGATACACCCATCAAGCGGAAGGTCTTACCACACGAAATTTGCTCCTCCAAAGGTTGCTGGTGTTGATGATGTCACGGGGGAACCTTTGATTCAACGGAAGGATGATACTGCAGCAGTTCTCAAATCTCGGCTGGAGGCTTTCCACAAGCAAACAGAGCCGGTGATTGATTACTATTCCAAGAAGAAAATTGTCGTAGAGCTTCAAGCAGAGAAGCCTCCCAAAGAGGTAAGCGCGGAGTCATTCGTCAGATCAAAGTCTATCGCGCTACGGAAAACCAAAGTAAGAAATTCTTTGATGTCTTCTTTCCGCTCTTTCCTCAACAGCCCTGTTGGCCCTAAAACAACTCATTTTTGGGGGCCTGTTGCTAACTTTGGTTTCGTTGCTGCTGGGCTTGCAGATGTGAAAAAACCCGCCGATATGATTTCTGGCAGAATGACGGCAGTTTTGTGCGTGTATTCGTTGCTATGCATGAGATTTGGGTACATGGTTCGGCCTAGGAACTATCTGATTGTGGGATGTCATGGTGCCAATGAGACTGTTCAGCTCTATCTTCTCTCTCGTTGGGCGATGGGCAAGCGAGAGACTTTGCTGGGAATTAATCCTATGGCTCCGACTGTTCCTATAGAGTTTGCTGGACAGAAGGAATCTCGTAAGTATTCACTCTCACAGGCAATGGGGAAATCGAGGAAATATTCCAAAGGGCTTTCTTTTGGTTTTGTTCCAGATTACCGACATGCTGTGGAAACTGTTGGCGAATCAGAAGGGTTTGGGAGCTCTGGACGAATGGATACTGGAATCTCTACTCTTGATGATTCACGGGCCATTAAGAGGAAACGTGTTAGTATGAATGCAGATGGTCACGATTGTTTTGGTGCTCCGCTTCAAGTTTTTTCTCTATCAACATTGTCTCGATCTGAAAGGAAGGATTTAGAGATAAGGTTAAAGTTAGAACTTGAGCAGGTTCGGGTGCTGCAAAAGAAAGCTTCTAATGTTGGTTCAATTTTTGCCGTCTCATCGTCTTGTAATAATCAGAGCTCCAGTGATCAGCACAGGGTAGCTCCCCCAGAGACTTTTAATAGGTCATCCGAGGCAGCTCCTCCTGCTAAAAAGCTACTGCCCTCTGGGCGCAATGGCCCTTCTGCTAAAAGGAGCTCATCTGGGCGTTTTGAGTCGATTAAACCAGTTGTTGTATCTGCTTCCTCGACAGCGACATTGAAACAATGTGAACAGCTGCTGCAACGTTTGATGTCGCATCAATTTGGTTGGGTTTTTAACACCCCAGTGGATGTTGTTAAATTGAATATTCCAGATTATTTTAATGTTATAAAGCATCCAATGGACTTGGGCACTGTGAAGTCGAAGATTGCTGCAGGAGAATACACACATCCTGTGGATTTTGCTGCCGATGTTCGGCTTACTTTCTCAAATGCGATGACTTACAACCCTCCCGGGAATGATGTCCATACCATGGCTAAGACACTAAGTAAATATTTTGAAGTTAGATGGAGAACTATAGAGAAGAAGCTCCCTGTAACAACTGAAGAACAACGTCAAGTACCTTCAGCCTCAATTGTTCATAAGGAAGCTGAAAGTACTCTGCCCGTGCCACCTTCAAAAAAGAAAAAAATACCTACAAATGAACCTGAGGTTCAACTAAACACTGTGGTAAAAATCATGACTGACCAGCAGAAGCATAAACTAAGTGTAGAGTTGGAGGCTTTGCTAGGAGAGTTGCCTGAAAGCATCATTGATTTCCTAAAGGAGCACAGTTCTAATTCTCAAGCTGGCGAGGATGAGATTGAAATTGACATCGATGCTCTTAGTGATGATACCTTGTTTGAATTGAGGAAGCTACTGGACGATTATATGATGGAAAAGCAGGATCGCTCAAAGGTTGAACCATGTGTAGTGGAGCTTCATAACGAATCTGGCTTTAGCAATTCATCGGTGCCACCTTGTAAAGGAGACGATCCTGTTGACGAGGACGTTGACATTGTTGGTGGAAATGACCCCCCTGTTTCAAGCTATCCTCCAATAGAGATAGAGAAAGATGCCGTCCGTAGAGATAGTAAATGCAGTAATTCCAGTAGCTCGAGTAGTGAATCAGATTCTGGCTCAGAAAGTTTATCGGGAAGTGAATCTAATGCTGCTAAAGCTTTAGATAGTAATGTGGCTCCAAAGGAAATTTTGTGTTCTGAAACAAATGTGGATCAGAAGCAACGTGAACTCGGAGATATAGAAATTAGAAATTATGAAGAAAGTGGGACTGGTCTAGTTGAGCAAACCACCCAGGCTAATACAAACACGATTGAGATGGATAGCTACCAAGAGGAGGGGGAGAGTGCTCCATCTAAGAGGCAAGTCTCCCCCGACAGGCTTTACCGTGCAGCTTTATTAAGGAATCGTTTTGCTGACACAATACTGAAAGCTCGAGAAAAGGCTCTTGAAAAGGGTGAGAAGAGGGATCCTGAAAAAGTGCGAATGGAGAGGGAAGAACTTGAGAGACAGCAAAGAGAAGAGAAAGCCCGGTTGCAAGCAGAGGCAAAAGCTGCAGAGGATGCTCGCAGGAAGGCGGAAGCTGAAGCTGCGGCTGAAGCTAAGAAGAAAATTGAGTTGGATAGGGAAGCTGCTCGTCAGGCTCTACTCAAGATGGAGAAGACTGTTGATATTAACGAGAACAGTCAATTCATGGAGGATCTAGAAATGCTTAGGGCTTCCAACGACGAGCACCTACCGAACTTCACAGAGGAGTCCAGCCCAGAACATTCTCAGAATGGATTTGGCAGTTTCAAGCTTCAAGGTAGTAACCCCTTGGAACAACTTGGCTTGTACATGAAGGTGGATGAGGAAGATGAGGAGGATGAAAGGGAACCACCCCCCAAAAGTATTAATAAGCCAGCAAATGATGTTGAAGAAGGGGAAATTGATTAG 3414 44.99 MPSSSGSARLEDVPSIDLMSELLRRMKCASKSDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGVKAKEAMDNGGLVSDDLVVGIIDEAVKKPSCQKGFILDGFPRTVVQAQKLDQMLEKQGTKIDTVLNFSIDDAILEERITGRWIHPSSGRSYHTKFAPPKVAGVDDVTGEPLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYSKKKIVVELQAEKPPKEVSAESFVRSKSIALRKTKVRNSLMSSFRSFLNSPVGPKTTHFWGPVANFGFVAAGLADVKKPADMISGRMTAVLCVYSLLCMRFGYMVRPRNYLIVGCHGANETVQLYLLSRWAMGKRETLLGINPMAPTVPIEFAGQKESRKYSLSQAMGKSRKYSKGLSFGFVPDYRHAVETVGESEGFGSSGRMDTGISTLDDSRAIKRKRVSMNADGHDCFGAPLQVFSLSTLSRSERKDLEIRLKLELEQVRVLQKKASNVGSIFAVSSSCNNQSSSDQHRVAPPETFNRSSEAAPPAKKLLPSGRNGPSAKRSSSGRFESIKPVVVSASSTATLKQCEQLLQRLMSHQFGWVFNTPVDVVKLNIPDYFNVIKHPMDLGTVKSKIAAGEYTHPVDFAADVRLTFSNAMTYNPPGNDVHTMAKTLSKYFEVRWRTIEKKLPVTTEEQRQVPSASIVHKEAESTLPVPPSKKKKIPTNEPEVQLNTVVKIMTDQQKHKLSVELEALLGELPESIIDFLKEHSSNSQAGEDEIEIDIDALSDDTLFELRKLLDDYMMEKQDRSKVEPCVVELHNESGFSNSSVPPCKGDDPVDEDVDIVGGNDPPVSSYPPIEIEKDAVRRDSKCSNSSSSSSESDSGSESLSGSESNAAKALDSNVAPKEILCSETNVDQKQRELGDIEIRNYEESGTGLVEQTTQANTNTIEMDSYQEEGESAPSKRQVSPDRLYRAALLRNRFADTILKAREKALEKGEKRDPEKVRMEREELERQQREEKARLQAEAKAAEDARRKAEAEAAAEAKKKIELDREAARQALLKMEKTVDINENSQFMEDLEMLRASNDEHLPNFTEESSPEHSQNGFGSFKLQGSNPLEQLGLYMKVDEEDEEDEREPPPKSINKPANDVEEGEID 1137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 291739 305414 + CmaCh10G000730.1 Cma10g00073 301389

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00073 1137 MobiDBLite consensus disorder prediction 852 880 - -
Cma10g00073 1137 Pfam Mitochondrial pyruvate carriers 263 351 IPR005336 GO:0005743|GO:0006850
Cma10g00073 1137 MobiDBLite consensus disorder prediction 1078 1097 - -
Cma10g00073 1137 Coils Coil 468 488 - -
Cma10g00073 1137 Pfam Bromodomain 569 653 IPR001487 GO:0005515
Cma10g00073 1137 Gene3D - 6 242 IPR027417 -
Cma10g00073 1137 ProSiteProfiles NET domain profile. 710 791 IPR027353 -
Cma10g00073 1137 MobiDBLite consensus disorder prediction 1118 1137 - -
Cma10g00073 1137 Gene3D - 554 682 IPR036427 GO:0005515
Cma10g00073 1137 CDD Bromo_plant1 565 663 IPR037377 -
Cma10g00073 1137 MobiDBLite consensus disorder prediction 975 1028 - -
Cma10g00073 1137 CDD ADK 35 237 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cma10g00073 1137 MobiDBLite consensus disorder prediction 804 881 - -
Cma10g00073 1137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 227 IPR027417 -
Cma10g00073 1137 SUPERFAMILY Bromodomain 546 671 IPR036427 GO:0005515
Cma10g00073 1137 MobiDBLite consensus disorder prediction 915 950 - -
Cma10g00073 1137 PANTHER TRANSCRIPTION FACTOR GTE10 387 1120 - -
Cma10g00073 1137 MobiDBLite consensus disorder prediction 500 517 - -
Cma10g00073 1137 PANTHER TRANSCRIPTION FACTOR GTE8 387 1120 - -
Cma10g00073 1137 Gene3D - 714 790 IPR038336 -
Cma10g00073 1137 ProSiteProfiles Bromodomain profile. 577 649 IPR001487 GO:0005515
Cma10g00073 1137 MobiDBLite consensus disorder prediction 916 936 - -
Cma10g00073 1137 Pfam Adenylate kinase 38 223 - -
Cma10g00073 1137 Coils Coil 988 1048 - -
Cma10g00073 1137 PRINTS Bromodomain signature 580 593 IPR001487 GO:0005515
Cma10g00073 1137 PRINTS Bromodomain signature 596 612 IPR001487 GO:0005515
Cma10g00073 1137 PRINTS Bromodomain signature 612 630 IPR001487 GO:0005515
Cma10g00073 1137 PRINTS Bromodomain signature 630 649 IPR001487 GO:0005515
Cma10g00073 1137 TIGRFAM adk: adenylate kinase 35 239 IPR006259 GO:0004017|GO:0005524|GO:0016776
Cma10g00073 1137 MobiDBLite consensus disorder prediction 1068 1137 - -
Cma10g00073 1137 SMART bromo_6 558 668 IPR001487 GO:0005515
Cma10g00073 1137 Hamap Adenylate kinase [adk]. 34 244 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cma10g00073 1137 MobiDBLite consensus disorder prediction 500 548 - -
Cma10g00073 1137 Pfam Adenylate kinase, active site lid 160 195 IPR007862 GO:0004017
Cma10g00073 1137 PRINTS Adenylate kinase signature 114 130 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cma10g00073 1137 PRINTS Adenylate kinase signature 65 79 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cma10g00073 1137 PRINTS Adenylate kinase signature 193 208 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cma10g00073 1137 PRINTS Adenylate kinase signature 37 50 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cma10g00073 1137 PRINTS Adenylate kinase signature 210 224 IPR000850 GO:0005524|GO:0006139|GO:0019205
Cma10g00073 1137 ProSitePatterns Adenylate kinase signature. 114 125 IPR033690 -
Cma10g00073 1137 Pfam Bromodomain extra-terminal - transcription regulation 720 781 IPR027353 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00073 - - - csv:101217420 1241.1
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00073 Cma11g00047 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02484 Cma-Chr4:17051107 Cma10g00073 Cma-Chr10:291739 2.49E-31 dispersed
Cma10g00073 Cma-Chr10:291739 Cma11g00049 Cma-Chr11:217982 0 dispersed
Cma18g00580 Cma-Chr18:3909887 Cma10g00073 Cma-Chr10:291739 2.35E-11 dispersed
Cma10g00073 Cma-Chr10:291739 Cma11g00047 Cma-Chr11:210860 2.27E-55 wgd
Cma10g00073 Cma-Chr10:291739 Cma11g01486 Cma-Chr11:9779687 0 wgd
Cma10g00073 Cma-Chr10:291739 Cma14g00701 Cma-Chr14:3557384 8.42E-53 wgd
Cma10g00073 Cma-Chr10:291739 Cma18g00224 Cma-Chr18:1216904 1.61E-142 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g148 . . . . . . . . . . Cma10g00073 Cma11g00047 Car10g00062 Car11g00041 . . Cpe04g01604 Bhi02g00541 Tan09g2354 . . Hepe09g0064 . . Cla06g01729 Cam06g1919 Cec06g1969 Cco06g1973 Clacu06g1875 Cmu06g1817 Cre06g2632 Cone2ag0961 Cone16ag0030 . Cone19ag0198 . . . . . . . . . . . . . Cmo10g00070 Cmo11g00047 . . . . . . . . . . . . . . . . . . . . Lsi06g01627 Csa01g00072 Chy02g02648 Cme02g02048
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003560 2 5 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 47
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00073 Cma_Chr10 FPKM 15.687487 20.052647 17.343744 19.370798 18.31444 16.327702 19.767908 28.366657 29.611334 28.801857