Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00077 ATGAAGAAAGCAACAACAGGCAGCATAATTCTTCTTTTAGTTTTGATTTCTCTACAAGACTTTGTTCGTTTTGCATTGGCGCTACCTCCTTCAGAGAGTAATCAGGACGAGGAGCAATCTGCAACTACGAGTGCAAAAACTTTCCAACAAGTCCTTTTGCATCTCTGGACTGGTCTAGCTGCTCAGAACCTCTCGAGCAAGACAAAGAGCATTTTGAGGAAGTTCATTGTTCCAGAGAAAGAAGTAGGACAGCCTGGAATATTCTTGAGGAGGTACGGACTAAACTTTCTTTACCAGTTAAGATTATGGACTCTACCGTTTGAAACAGACATGTTAATTGACGTTCTGTTGTTTCTACTTCAGCATTTTCTGCCGTTTATTGAGAAGGAAAATTATCAGGTTTCAACCAAGTGTAGGCTTCATCCAAACAATGATCTCTTCAGAGATCAGGAACAGCACAAGATTCATTTTGATATAAATCATTGGCAGTGTGGATACTGTCGGAAAAGCTTTCGTGCAGAAAAATATCTTGATAAGCATTTCGACAACAGACATTACGATCTTCTGAATGTTAGTCACGGGAAGTGCTTAGCTGATTTATGTGGGGCTTTACATTGTGACCTAAAGATGGATATCAAGTCACGTAAATCTAAATGCAAGCCTGCAGCTGCAGCTAGGAACAAGCATTTATGTGAGAGTCTTGCTGATACTTGTTTTCCAATTAATGAGGGACCATCAGCAAGCCGTCTTCATGAGTTGTTTCTTCATCAATTCTGTGGAGCTCATTCTTGCACTGAGAAACAAAGGCCATTTTCTAGAGGAGCGGAGAGGCAACCAGGCATCTTTTACATGGCATCTTCAATACTGATTTTGATGTTGCTACCAATTTTCTATGTCATTGTCTATTTGCACCGCAGAGTGAACTCAGCCCCAACTGCCAACCTGATCAGAGGTTCATCCATGATCGTCTCATCCAGCTTGCTGGTTTAG 990 41.21 MKKATTGSIILLLVLISLQDFVRFALALPPSESNQDEEQSATTSAKTFQQVLLHLWTGLAAQNLSSKTKSILRKFIVPEKEVGQPGIFLRRYGLNFLYQLRLWTLPFETDMLIDVLLFLLQHFLPFIEKENYQVSTKCRLHPNNDLFRDQEQHKIHFDINHWQCGYCRKSFRAEKYLDKHFDNRHYDLLNVSHGKCLADLCGALHCDLKMDIKSRKSKCKPAAAARNKHLCESLADTCFPINEGPSASRLHELFLHQFCGAHSCTEKQRPFSRGAERQPGIFYMASSILILMLLPIFYVIVYLHRRVNSAPTANLIRGSSMIVSSSLLV 329
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 321006 326560 + CmaCh10G000770.1 Cma10g00077 301393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00077 329 ProSitePatterns Zinc finger C2H2 type domain signature. 164 185 IPR013087 -
Cma10g00077 329 PANTHER ZINC FINGER PROTEIN-RELATED 122 315 - -
Cma10g00077 329 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 122 315 - -
Cma10g00077 329 ProSiteProfiles Zinc finger C2H2 type domain profile. 162 185 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00077 Cma-Chr10:321006 Cma11g01476 Cma-Chr11:9716312 8.89E-80 wgd
Cma10g00077 Cma-Chr10:321006 Cma14g00694 Cma-Chr14:3515599 1.77E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35676 None None None None Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00077 - - csv:101218367 380.948