Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00081 ATGGTTTCTCAAACATGCACAATGCCATGTCAAACGACGCCGTTTCAGCTTGCGACTCTCACAACCCCAAACACGAGTTGCCTGGCCGCTCACAACGGGCTCCTCTACTCCGGCTCCACCAACCAAATCGCCGTCTTCGATTTAACCAACTTTACCCAAATCGACACGCTTCGCACTAACGACGCTGCTTCGGGGTCCGTGAAGTCCATCGCTTTTGGGCGTTGGAAAATCTTCACGGCCCACCAGGACTGCAAGATCCGCGTGTGGAAGATCACCTGTTCAAAACGACGACACAGACACCGTCTTCTGGCTACTCTTCCCACCGTTAAGGACAAGCTCTACCGGTTTATTTCGCCGAGTAATTACGTTCATGTACGGCGCCACCACAAGCGGCTGTGGATTGAGCATTGGGATGCGGTTTCTGGGTTGGTGGTTAATGAGGGGTTTGTGTACTCTGTTTCCTGGGATCGGAGTTTTAAGGTTTGGAGTGCTTCCGACCATAAGTGTTTGTCGTCGGTGAAAGCCCACGACGATGCAGTCAACGCGGTTGGTGTGGGTCAGAACGGCGTCGTTTACACTGGCTCTGCCGATGGGATTATCGGAGTTTGGGAGATCAGGGAGGGGGAGAAAAAGAAGCATAGGTTGGTGAAGACTTTGGACAAGCATAAATCCTCGATAAATGCAATCGCACTGAACAAGGGAGGGACGGTGATGTTTTCCGGGAGCAGTGACCGTTTGATAATGGTGTGGAAGAAAGATGAGGCGGGGAAGCAGATTGGGTTTGTGGAGGCTTTATGGGGTCATGAAGGGGCTGTATTGTGCTTGTATAGTGTCCGAGATTTGTTAGTCAGTGGGTCCGAGGATCGGACCGTCAGGATTTGGAGAGGTGACGTCACAAATGGTTATCAATGTACGGCTGTGATGGAAGGACACAGATCGCCGGTGAAGTCGTTGGTCGTGGTCGGAGCCGACTCGCTCTCGCAGTCGCTAGTCTCGCTCGCCATGGAAGAGAGCACATTCGATCCTGATCTGATTCACGCCATCTTCAAGCTTGAGTGGACCAGAAGATCACTTGAGCGCGAGAAAAACGAGAGCTCGGATGCTATGGATTGTGAGGTTGACGCTGGAACATCAAAGAAGAGCAGGCCGATGTCAGCCAATGCTAATGCACTTAAATTGAGCTCTAAACTTCTACAAATCTTTGTGTCAGAGGCCGTACAGCGTGCTGCAACAATTGCTGAAGCAGAAGGTATTAGCAGAATTGAAGCCACTCATTTGGAGAGGATTCTTCCGCAGTTACTACTGGACTTTTGA 1314 50.99 MVSQTCTMPCQTTPFQLATLTTPNTSCLAAHNGLLYSGSTNQIAVFDLTNFTQIDTLRTNDAASGSVKSIAFGRWKIFTAHQDCKIRVWKITCSKRRHRHRLLATLPTVKDKLYRFISPSNYVHVRRHHKRLWIEHWDAVSGLVVNEGFVYSVSWDRSFKVWSASDHKCLSSVKAHDDAVNAVGVGQNGVVYTGSADGIIGVWEIREGEKKKHRLVKTLDKHKSSINAIALNKGGTVMFSGSSDRLIMVWKKDEAGKQIGFVEALWGHEGAVLCLYSVRDLLVSGSEDRTVRIWRGDVTNGYQCTAVMEGHRSPVKSLVVVGADSLSQSLVSLAMEESTFDPDLIHAIFKLEWTRRSLEREKNESSDAMDCEVDAGTSKKSRPMSANANALKLSSKLLQIFVSEAVQRAATIAEAEGISRIEATHLERILPQLLLDF 437
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 335128 338309 + CmaCh10G000810.1 Cma10g00081 301397

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00081 437 SMART WD40_4 166 204 IPR001680 GO:0005515
Cma10g00081 437 SMART WD40_4 13 47 IPR001680 GO:0005515
Cma10g00081 437 SMART WD40_4 212 251 IPR001680 GO:0005515
Cma10g00081 437 SMART WD40_4 119 163 IPR001680 GO:0005515
Cma10g00081 437 SMART WD40_4 50 90 IPR001680 GO:0005515
Cma10g00081 437 SMART WD40_4 258 295 IPR001680 GO:0005515
Cma10g00081 437 ProSitePatterns Trp-Asp (WD) repeats signature. 191 205 IPR019775 -
Cma10g00081 437 Gene3D - 7 104 IPR015943 GO:0005515
Cma10g00081 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 173 213 IPR001680 GO:0005515
Cma10g00081 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 219 251 - -
Cma10g00081 437 SUPERFAMILY WD40 repeat-like 26 324 IPR036322 GO:0005515
Cma10g00081 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 219 251 IPR001680 GO:0005515
Cma10g00081 437 PANTHER F21J9.19 17 329 - -
Cma10g00081 437 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 17 329 IPR045182 -
Cma10g00081 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 265 294 - -
Cma10g00081 437 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 173 209 - -
Cma10g00081 437 Pfam WD domain, G-beta repeat 267 294 IPR001680 GO:0005515
Cma10g00081 437 Pfam WD domain, G-beta repeat 215 251 IPR001680 GO:0005515
Cma10g00081 437 Gene3D - 105 211 IPR015943 GO:0005515
Cma10g00081 437 ProSiteProfiles Trp-Asp (WD) repeats profile. 265 294 IPR001680 GO:0005515
Cma10g00081 437 MobiDBLite consensus disorder prediction 364 383 - -
Cma10g00081 437 Pfam CENP-S associating Centromere protein X 384 437 IPR018552 GO:0006281|GO:0051382
Cma10g00081 437 Gene3D - 212 338 IPR015943 GO:0005515
Cma10g00081 437 Gene3D - 396 437 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00081 - - - csv:101204201 513.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01790 Cma-Chr4:9033323 Cma10g00081 Cma-Chr10:335128 1.17E-106 dispersed
Cma10g00081 Cma-Chr10:335128 Cma18g00145 Cma-Chr18:738229 6.19E-81 dispersed
Cma13g00576 Cma-Chr13:5781008 Cma10g00081 Cma-Chr10:335128 6.67E-13 transposed
Cma10g00081 Cma-Chr10:335128 Cma18g00732 Cma-Chr18:6615935 2.57E-102 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g870 . . . . . . . . . . Cma10g00081 . Car10g00072 . . . . Bhi02g00578 . . . Hepe09g0083 . . Cla06g01713 Cam06g1902 Cec06g1952 Cco06g1955 Clacu06g1858 Cmu06g1800 Cre06g2614 . . . . . . . . . . . . Bpe07g00866 . . . . Cmo10g00082 . . . . . . . . . . . . . . . . . . . . . Lsi06g01608 Csa01g00090 . Cme02g02030
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0014149 0 2 0 0 1 0 1 1 0 1 1 0 1 1 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 23
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00081 Cma_Chr10 FPKM 0.964461 1.812758 0.910871 0.712424 0.895312 1.134908 1.146377 1.548977 1.298287 1.683617