Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00082 ATGAATTTAACTCAAATATCCCCGTCACTCCGCTATTGTGCGCCTTCTATTGGACTGTACTTCAACACCCCCTCATCCCTCCGCCGCCACCGCCGTCTCCCTCTCCGTCTTCCCACCGCCCTACCACCGACCGCTTCTTCTGTTCCGAAAACCACCACCACTATCATCCCCTTCTTACCTCGATTTCTAAACCCTCATTTCGTCACGGGAAATTGTCTTCTTTCCAGGATGGAGAGATTCTGGAGTGGAAGTGGCATAGGTACAAACAAAGAAATGGTGGAGAATCTCCAGAGCTATGGAGTGGTTAGGTCAAAGAAGGTTTCTGAAGTAATGGAGAGTGTAGATAGGGCCTTCTTTGTACCGGATGGTGTTCCTCCTTATGTCGATACTCCCCTGCCGATAGGTTACAATGCCACTATATCTGCACCTCACATGCATGCTACTTGCCTTCAGTTGTTGGAGAAACACTTGCAGCCTGGAATGCGAGCTCTGGACGTTGGCTCAGGAACGGGATACTTGACTGCATGCTTTGCATTAATGGTTGGACCCGAAGGTCGTGCCGTTGGTGTGGAACATATTCCTGAGCTGGTTGCTTCCTCAATCAAGAATATTGAAAAAAGTGCTGCTGCTCCTTTACTGAAAAAAGGCTCCCTCTCTGTACATGTTGGTGATGGCAGGCAGGGTTGGGCAGAGTGTGCACCGTACGACGCCATTCATGTTGGAGCAGCTGCTGCTGAAATTCCTCCGGCTCTCATTGACCAGTTAAAACCAGGCGGGAGAATGGTGATTCCAGTTGGGAACATATTCCAGGATTTAAAGGTTGTGGACAAAGATACCGATGGCTCTATTAACATCCACGACGAGACTTCTGTTCGTTATGTGCCCCTTACCAGTCGAGAAGCTCAGTTAGGTGACAACTGA 921 49.19 MNLTQISPSLRYCAPSIGLYFNTPSSLRRHRRLPLRLPTALPPTASSVPKTTTTIIPFLPRFLNPHFVTGNCLLSRMERFWSGSGIGTNKEMVENLQSYGVVRSKKVSEVMESVDRAFFVPDGVPPYVDTPLPIGYNATISAPHMHATCLQLLEKHLQPGMRALDVGSGTGYLTACFALMVGPEGRAVGVEHIPELVASSIKNIEKSAAAPLLKKGSLSVHVGDGRQGWAECAPYDAIHVGAAAAEIPPALIDQLKPGGRMVIPVGNIFQDLKVVDKDTDGSINIHDETSVRYVPLTSREAQLGDN 306
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 342983 346462 + CmaCh10G000820.1 Cma10g00082 301398

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00082 306 Gene3D Vaccinia Virus protein VP39 81 305 IPR029063 -
Cma10g00082 306 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 89 274 IPR029063 -
Cma10g00082 306 CDD AdoMet_MTases 162 265 - -
Cma10g00082 306 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 62 303 IPR000682 GO:0004719|GO:0036211
Cma10g00082 306 PANTHER PROTEIN-L-ISOASPARTATE O-METHYLTRANSFERASE 62 303 - -
Cma10g00082 306 Pfam Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 89 300 - -
Cma10g00082 306 ProSitePatterns Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 223 238 IPR000682 GO:0004719|GO:0036211
Cma10g00082 306 TIGRFAM pimt: protein-L-isoaspartate O-methyltransferase 88 302 IPR000682 GO:0004719|GO:0036211
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00082 K00573 E2.1.1.77, pcm; protein-L-isoaspartate(D-aspartate) O-methyltransferase [EC:2.1.1.77] - csv:101220740 521.931
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00082 Cma11g00061 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00082 Cma-Chr10:342983 Cma11g00061 Cma-Chr11:307695 5.13E-157 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g867 . . Bda06g00625 Bda15g00531 Bpe12g00677 . . . . . Cma10g00082 Cma11g00061 Car10g00074 Car11g00055 Sed08g0070 . Cpe04g01591 Bhi02g00585 Tan09g2322 Cmetu02g0735 . . . . Cla06g01710 Cam06g1899 Cec06g1948 Cco06g1952 Clacu06g1855 Cmu06g1796 Cre06g2611 Cone2ag0941 Cone16ag0061 . . . . . . Blo13g00156 Blo15g00243 . . . . . Bma08g00074 . Cmo10g00084 Cmo11g00063 . . . . . . . . . . . . . . . . . . . . Lsi06g01604 Csa01g00093 Chy02g02628 Cme02g02027
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003446 2 3 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 7 4 1 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00082 Cma_Chr10 FPKM 17.217167 18.318945 46.037273 49.567326 41.401875 45.180737 44.644402 44.819901 47.027264 46.970921