Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00083 ATGGCTTCTTCTTCAGCCACTTCAATTTTGAAGCCCTTATCCAAGGCAGATTCTTGCCTTCTCTCTTTGCCTTCTCTCTTCACCTGCAGACCCCCGCACTCTTTTCTCTCTTTCCCTTCCAAATTCACCACCGCCCCCTTCCATCTTTCCTCTTCTCATTGTTCTTCGCTCTTTTCCTCCTCGAAGAAGAAGACACATCTCTTATCGCTAGTTGCCTCTGTGGCCCAGTCTTCGGAGTGGGGCCAAGAAGACGATACCATCACCATTGACCCAAAACTCAGCGGCGACGAGGATGGCGAAGAAGGCCCTCATTGGGAAAATCAAGAGCTCAGTGAGAATGAGTCTCGTATTTCTGATTGGGAAGGTGAAGGCGAAGGCGAAGATGATGGAGGAAGTGAGGGTGAAGGAGGAGGAGTTTTGGAGCTGGGAGACGAGGAAGAAGGCCCTTTGGAGGAGCCAAATGAAGACGCTAAATTGTATGTTGGGAATTTGTCATATGACGTCGATAGTCAAAAGCTTGCAATGCTGTTTGAGAAGGCTGGAACTGTCGAGATTGCTGAGGTTATTTACGACCGACAATCAGATCGGAGTCGTGGTTTCGGTTTTGTGACAATGAGTAGTGTTGAAGAAGCTGAGAAAGCTGTGGATACCTTCAACCGTTATGAGTTCTTGGGGAGGACGTTGGTTGTTAATAAGGCTGCCGCCAGAGGTTCAAGGCCAGAACGCCAACCACGAACATTTCAACCAGCTTTCAGAATCTATGTTGGTAATCTTGCATGGGAAGTAGACAGTGCACGCCTGGAGCAGGTCTTCAGTGAACATGGTAAAGTAGTAGACGCTCGGGTTCTTTACGACCGGGACAGTGGCCGTTCTCGTGGATTTGGCTTCGTGACCATGGCCGACGAAACTGGAATGAATGATGCCATTGCTGCTCTGGATGGGCAGAGTGTAGATGGAAGGGCAATCAGAGTGAATGTTGCAGAGGAAAAACCAAGGCGCAACTTCTGA 1008 49.11 MASSSATSILKPLSKADSCLLSLPSLFTCRPPHSFLSFPSKFTTAPFHLSSSHCSSLFSSSKKKTHLLSLVASVAQSSEWGQEDDTITIDPKLSGDEDGEEGPHWENQELSENESRISDWEGEGEGEDDGGSEGEGGGVLELGDEEEGPLEEPNEDAKLYVGNLSYDVDSQKLAMLFEKAGTVEIAEVIYDRQSDRSRGFGFVTMSSVEEAEKAVDTFNRYEFLGRTLVVNKAAARGSRPERQPRTFQPAFRIYVGNLAWEVDSARLEQVFSEHGKVVDARVLYDRDSGRSRGFGFVTMADETGMNDAIAALDGQSVDGRAIRVNVAEEKPRRNF 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 346447 348394 - CmaCh10G000830.1 Cma10g00083 301399

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00083 335 MobiDBLite consensus disorder prediction 79 156 - -
Cma10g00083 335 SUPERFAMILY RNA-binding domain, RBD 245 333 IPR035979 GO:0003676
Cma10g00083 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 235 IPR000504 GO:0003723
Cma10g00083 335 SMART rrm1_1 252 325 IPR000504 GO:0003723
Cma10g00083 335 SMART rrm1_1 158 231 IPR000504 GO:0003723
Cma10g00083 335 Gene3D - 90 246 IPR012677 -
Cma10g00083 335 Gene3D - 247 335 IPR012677 -
Cma10g00083 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 228 IPR000504 GO:0003723
Cma10g00083 335 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 253 323 IPR000504 GO:0003723
Cma10g00083 335 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 251 329 IPR000504 GO:0003723
Cma10g00083 335 CDD RRM_HP0827_like 158 233 - -
Cma10g00083 335 PANTHER OS02G0815200 PROTEIN 1 334 - -
Cma10g00083 335 CDD RRM_HP0827_like 252 328 - -
Cma10g00083 335 SUPERFAMILY RNA-binding domain, RBD 153 246 IPR035979 GO:0003676
Cma10g00083 335 MobiDBLite consensus disorder prediction 85 120 - -
Cma10g00083 335 MobiDBLite consensus disorder prediction 121 152 - -
Cma10g00083 335 PANTHER RIBONUCLEOPROTEIN 1 334 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00083 - - - mcha:111006981 477.633
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00083 Cma11g00062 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01205 Cma-Chr4:6135836 Cma10g00083 Cma-Chr10:346447 7.79E-08 dispersed
Cma06g00381 Cma-Chr6:1767620 Cma10g00083 Cma-Chr10:346447 2.09E-16 dispersed
Cma10g00083 Cma-Chr10:346447 Cma14g00213 Cma-Chr14:918156 6.06E-51 dispersed
Cma06g01743 Cma-Chr6:10644563 Cma10g00083 Cma-Chr10:346447 1.92E-06 transposed
Cma10g00083 Cma-Chr10:346447 Cma11g00062 Cma-Chr11:311645 1.80E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g866 . . Bda06g00624 . Bpe12g00685 . . Bma12g01062 . . Cma10g00083 Cma11g00062 Car10g00075 Car11g00056 Sed08g0071 . Cpe04g01590 Bhi02g00588 Tan09g2319 Cmetu02g0952 . Hepe09g0089 . . Cla06g01709 Cam06g1898 Cec06g1947 Cco06g1951 Clacu06g1854 Cmu06g1795 Cre06g2610 . . Cone13ag0188 . . . . . Blo13g00155 Blo15g00244 . . Bpe07g00865 . . . . Cmo10g00085 Cmo11g00064 . . . . . Cpe18g00878 . . . . . . . . . . . . . . Lsi06g01603 Csa01g00094 Chy02g02627 Cme02g02026
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008467 1 1 2 1 1 1 2 1 1 0 0 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 0 2 1 2 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00083 Cma_Chr10 FPKM 33.504959 32.878483 109.731285 113.140091 524.397217 498.441071 532.861938 106.347237 113.759438 102.004501