Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00087 ATGCCGTTTTTTCAGATTGTTCTCAGCCGAAGTTCTTGTAAAGTGATGGGTGGGAAAAGTTCTAAGCCTGGAAGTTCAAGACGCCATTCGTCTAGTTGGTCTAACTCACAGCAGTGGAGTAATTACAATTATCCGGGGTCGCCATATAATCAACCAAGGCCACAGTATCAGTTTGCACCTCCAACTCCAAGCTATGGTGGAACTCAGGCCCCTGAGACAAGAAAGAGGCTGGAGAGGAAGTATTCAAGGATAGATGATAACTATAATAGTCTTGAGCAGGTTACTGAGGCATTGGCTCGTGCAGGCCTCGAGTCTTCGAATCTTATCGTTGGTATAGATTTCACAAAGAGCAATGAGTGGACAGGAGCAAGATCATTTAACCGTAGAAGTTTGCATCACATTGGAGATGAGCAAAATCCCTATGAACAAGCAATAGCAATTATTGGGAAAACATTATCTTCCTTTGATGAAGATAATTTGATTCCTTGCTTTGGTTTTGGAGATGCATCGACTCATGACCAAGAAGTTTTCAGCTTTTATCCAGACGAGCGAGTTTGTATTGGATTTGAAGAAGTGTTGGATAGATATAGGGAACTTGTGCCTCATCTTCGACTTGCAGGACCAACATCATTTGCTCCTATTATCGAAATGGGTATCACAATTGTAGAGCAAAGTGGAGGACAATATCATGTATTGGTAATAATAGCTGATGGTCAGGTTACAAGAAGTGTTGATACAGAGGGTGGACAGTTTAGCCCACAGGAAAAGAAAACCATTGAAGCAATTGTGAAAGCTAGTGCATATCCCCTGTCGATTATACTGGTCGGAGTAGGGGATGGACCTTGGGACATGATGAGGGAATTTGACGACAATATCCCGGCTCGAGCCTTTGATAATTTCCAAGTAACTACTCTTCTTAGGAGGGTTTTAGTGTTTTGTTTCTCAAACTGGACTTGCTTCTGTCATAGCTTGAAATCTGAGAAATTCCATTTTGCACTGCAGTTTGTGAACTTCACAAATATAATGTTGAAAAATATGGATCGAGCTAGAAAGGAAACGGAATTTGCTCTAGCAGCACTCATGGAAATACCCTCCCAGTATAAAGCAACACTGGAGCTTGATATTTTGGGTATTCTCTTTCACTACTCCACCAGTGCCAGTAGAGGGAAGGAAATCGACCGATTTCCTCTTCCCCCTCCTCGTTATGGTCCTAGTTTCCAGAAGACCTCAAACTCGAGCAGCTCTCGCCCAATGCCACCCTCATTTGCTGGAGTTGCTCCTGTCCGATCTGCACCTCCTCTAAGTTCGGTTCCTGATGCCCATGCTTGTCCCATTTGCATCTCCAATGCAAAAGATATGGCTTTTGGTTGTGGACATCAGACATGCTGTGAATGTGGACAGGATCTTCAGTTGTGCCCCATATGCCGCAGCTTTATTGAAACTAAGATAAAGCTTTATTAG 1461 43.12 MPFFQIVLSRSSCKVMGGKSSKPGSSRRHSSSWSNSQQWSNYNYPGSPYNQPRPQYQFAPPTPSYGGTQAPETRKRLERKYSRIDDNYNSLEQVTEALARAGLESSNLIVGIDFTKSNEWTGARSFNRRSLHHIGDEQNPYEQAIAIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERVCIGFEEVLDRYRELVPHLRLAGPTSFAPIIEMGITIVEQSGGQYHVLVIIADGQVTRSVDTEGGQFSPQEKKTIEAIVKASAYPLSIILVGVGDGPWDMMREFDDNIPARAFDNFQVTTLLRRVLVFCFSNWTCFCHSLKSEKFHFALQFVNFTNIMLKNMDRARKETEFALAALMEIPSQYKATLELDILGILFHYSTSASRGKEIDRFPLPPPRYGPSFQKTSNSSSSRPMPPSFAGVAPVRSAPPLSSVPDAHACPICISNAKDMAFGCGHQTCCECGQDLQLCPICRSFIETKIKLY 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 356190 359937 - CmaCh10G000870.1 Cma10g00087 301403

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00087 486 MobiDBLite consensus disorder prediction 404 419 - -
Cma10g00087 486 SUPERFAMILY vWA-like 107 289 IPR036465 -
Cma10g00087 486 SMART VWA_4 105 310 IPR002035 -
Cma10g00087 486 PANTHER RING-FINGER PROTEIN 16 302 - -
Cma10g00087 486 PANTHER RING-FINGER PROTEIN 332 486 - -
Cma10g00087 486 SUPERFAMILY RING/U-box 441 482 - -
Cma10g00087 486 CDD RING-HC_RGLG_plant 443 486 IPR045317 GO:0061630|GO:0070534
Cma10g00087 486 Pfam Zinc finger, C3HC4 type (RING finger) 441 480 - -
Cma10g00087 486 PANTHER COPINE FAMILY PROTEIN 1 16 302 - -
Cma10g00087 486 PANTHER COPINE FAMILY PROTEIN 1 332 486 - -
Cma10g00087 486 Pfam Copine 130 301 IPR010734 -
Cma10g00087 486 MobiDBLite consensus disorder prediction 14 74 - -
Cma10g00087 486 Coils Coil 74 94 - -
Cma10g00087 486 MobiDBLite consensus disorder prediction 14 53 - -
Cma10g00087 486 MobiDBLite consensus disorder prediction 391 422 - -
Cma10g00087 486 ProSiteProfiles Zinc finger RING-type profile. 443 476 IPR001841 -
Cma10g00087 486 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 430 486 IPR013083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00087 K16280 RGLG; E3 ubiquitin-protein ligase RGLG [EC:2.3.2.27] - csv:101221610 735.717
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00673 Cma-Chr2:4089925 Cma10g00087 Cma-Chr10:356190 3.60E-134 dispersed
Cma03g00606 Cma-Chr3:5340013 Cma10g00087 Cma-Chr10:356190 5.41E-134 dispersed
Cma10g00087 Cma-Chr10:356190 Cma15g00367 Cma-Chr15:1681009 1.04E-160 dispersed
Cma10g00087 Cma-Chr10:356190 Cma14g00681 Cma-Chr14:3463094 2.03E-172 wgd
Cma10g00087 Cma-Chr10:356190 Cma18g00733 Cma-Chr18:6626007 1.27E-09 wgd
Cma10g00087 Cma-Chr10:356190 Cma04g02671 Cma-Chr4:18128508 6.51E-132 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g862 . . . . . . . . . . Cma10g00087 . Car10g00077 Car11g00057 . . Cpe04g01589 Bhi02g00592 . . . Hepe09g0092 . . Cla06g01707 Cam06g1895 Cec06g1944 Cco06g1948 Clacu06g1851 Cmu06g1792 Cre06g2607 . . Cone13ag0185 Cone19ag0178 . . . . . . . . . . . . . Cmo10g00088 . . . . . . . . . . . . . . . . . . . . . Lsi06g01600 Csa01g00097 Chy02g02625 Cme02g02023
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000334 5 8 3 4 5 2 4 4 4 4 2 2 4 4 4 7 3 7 6 4 5 4 3 3 3 3 4 11 11 3 136
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00087 Cma_Chr10 FPKM 20.247091 22.937252 16.042759 16.492506 5.128934 5.719098 6.743337 2.148851 2.295991 1.753744