Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00088 ATGGAAGCTCTGGCGCTTCCTTCTACGAATTCTCTTACCATTTCCTGTTCTAATTTGCAGAATGGGAGTTTCGCCAACTTGCCCGGAACACTGCATCACTGTAAATTTTACGGGCAATCCACCTTAAGGTTCAGGCCCCTTCATTGTACCCGCCACTATCAGTCCAATGTTATCAAAATGCAAAGTGACAGTGAAGACTATGAGCTGAAGCAAATGAGGGACATGGCTGCAGCTAAAAAGAGATGGGACTCTCTGATTCGGGAGGGCAAAGTGAAAGTTCTGACGCCAAGGGAAGCTGGTTATGCCATTCAACTCTCTGATAAGACATTGCTTGATGTGCGTCCTTCTACAGAACACCAAAAGGCATGGGTTAAAGGCTCAACATGGATCCCTATCTTTGAAGTTGATGACAAAGTTGATCCTGGAACTCTTTCTCGAAAGGTCACAAGCTTCATGATGGGGGGTTGGTGGAGTGGTGTGCCTACAGTATCCTACAATAGCCGCTTCTTGTCAGAAGTTCAAGAGAAATTTCCAAAAGATGCTGACCTTATTCTTGCATGTCAAAAGGGATTGAGGTCCCTAGCTGCATGCGAGCTCCTCTACAATGCTGGTTACAAAAACCTCTTCTGGGTTCAAGGGGGTCTAGACGCTGCTGAAGAAGAGGATCTTGCCAGAGAAGGTCCTCAGCCTTTGAAATTTGCTGGGATTGGTGGGCTCTCAGAATTCCTTGGCTGGACCGATCAACAAAGGGTGGCTGGTGCCAAAGAGGGTTGGGGTTATCGCTTGGTTTACTCTGCTCGTCTGATTGCAGTCTTCCTTGCTGCTGATGCCCTGTTTATTGGCGCTCAGCAATTGGGTCGCTATATTCAAGACTTACGGTCTCACTAA 888 47.18 MEALALPSTNSLTISCSNLQNGSFANLPGTLHHCKFYGQSTLRFRPLHCTRHYQSNVIKMQSDSEDYELKQMRDMAAAKKRWDSLIREGKVKVLTPREAGYAIQLSDKTLLDVRPSTEHQKAWVKGSTWIPIFEVDDKVDPGTLSRKVTSFMMGGWWSGVPTVSYNSRFLSEVQEKFPKDADLILACQKGLRSLAACELLYNAGYKNLFWVQGGLDAAEEEDLAREGPQPLKFAGIGGLSEFLGWTDQQRVAGAKEGWGYRLVYSARLIAVFLAADALFIGAQQLGRYIQDLRSH 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 361846 366687 + CmaCh10G000880.1 Cma10g00088 301404

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00088 295 PANTHER RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 11, CHLOROPLASTIC 1 294 IPR044664 -
Cma10g00088 295 SMART rhod_4 94 224 IPR001763 -
Cma10g00088 295 CDD RHOD 109 217 - -
Cma10g00088 295 ProSiteProfiles Rhodanese domain profile. 104 227 IPR001763 -
Cma10g00088 295 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 88 225 IPR036873 -
Cma10g00088 295 Gene3D - 91 259 IPR036873 -
Cma10g00088 295 Pfam Rhodanese-like domain 106 217 IPR001763 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00088 - - - csv:101221836 530.02
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00088 Cma-Chr10:361846 Cma14g00066 Cma-Chr14:291593 5.97E-33 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g860 . . Bda06g00622 . . . . Bma12g01059 . . Cma10g00088 . Car10g00078 . . . . Bhi02g00594 . . . . . . Cla06g01706 Cam06g1894 Cec06g1943 Cco06g1947 Clacu06g1850 Cmu06g1791 Cre06g2606 . Cone16ag0063 . . . . . . . . . . . . . . . Cmo10g00089 . . . . . . Cpe18g00873 . . . . . . . . . . . . . . Lsi06g01599 Csa01g00099 Chy02g02624 Cme02g02022
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g00511 . 59 371 Sulfurtransferasese/Rhodanese AT1G79230 71.6 1.9e-137 486.1
Cma16g00370 . 59 341 Sulfurtransferasese/Rhodanese AT1G79230 61.3 1.8e-111 399.8
Cma04g00511 . 59 316 Sulfurtransferasese/Rhodanese AT1G16460 69.4 8.9e-104 374.0
Cma16g00370 . 59 288 Sulfurtransferasese/Rhodanese AT1G16460 57.7 8.4e-78 287.7
Cma13g01050 . 35 311 Sulfurtransferasese/Rhodanese AT5G23060 61.6 2.6e-86 316.2
Cma18g00031 . 39 315 Sulfurtransferasese/Rhodanese AT5G23060 57.3 1.5e-73 273.9
Cma14g02099 . 1 374 Sulfurtransferasese/Rhodanese AT4G01050 59.3 1.7e-111 400.6
Cma11g01228 . 36 639 Sulfurtransferasese/Rhodanese AT1G09280 63.7 1.2e-222 770.0
Cma04g01058 . 90 449 Sulfurtransferasese/Rhodanese AT2G40760 74.1 1.0e-155 547.4
Cma11g01009 . 82 428 Sulfurtransferasese/Rhodanese AT1G17850 66.0 3.5e-145 512.3
Cma03g00100 . 61 259 Sulfurtransferasese/Rhodanese AT2G42220 75.4 2.4e-84 309.3
Cma14g00066 . 4 215 Sulfurtransferasese/Rhodanese AT3G08920 58.0 9.2e-67 250.8
Cma10g00088 . 1 295 Sulfurtransferasese/Rhodanese AT4G24750 66.4 9.7e-112 400.6
Cma02g01280 . 67 292 Sulfurtransferasese/Rhodanese AT5G19370 64.3 9.7e-83 304.3
Cma16g00905 . 118 468 Sulfurtransferasese/Rhodanese AT5G55130 71.8 4.0e-147 518.5
Cma16g00031 . 57 237 Sulfurtransferasese/Rhodanese AT4G27700 79.6 1.1e-78 290.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011200 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00088 Cma_Chr10 FPKM 1.810304 1.834907 9.012375 8.408999 28.851263 32.133347 28.914408 7.010861 5.886968 6.250659