Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00089 ATGGAAGGTGATCTCCTTGTTGCGTTGATTGGTCACCCAGTTTCCGTCGCTGGTTTCATTGTCCTCTTCATCTGGCTTTTGTTTCGTCAAAAATCTTCATCACAAGAAGAACAATCCTCGCCCCCATCTCCACCAACAAAGCTTCCAATTTTCGGACATCTTTTGAAGCTTGGCTCCCATCCTCATATCACTCTCCAGAGCTACGCCCGCCGCCATGGCCCTCTGTTTCTCCTCCACCTCGGCTCCAAGCCCACCATCGTGGTCTCTTCATCCGAAATAGCTCGTGATGTCATGAAAACCCACGATCTTGTCTTTGCCAACCGACCCAAATCGAGTATTTCCGATAAGCTTCTTTACAACGCCAGCGACATATCAGCTGCTCCTTATGGCGAGTATTGGAGGCAGATGAGAAGCGTTGGCGTACTTCACCTTTTAAGTAACAAAAGGGTTCAATCCTTCCGCTCTGTGAGAGAAGAAGAGGTCAAATTAATGATCGAGAAGATCCAACGGAACCCAATATCGGTGAATTTGACTGAAACCTTCTCTGGACTGACCAACAACGTGGTTTGCAGAGTGGCTTTAGGGGCAAAATATGGAGTGGGAGAAGATTGGATTAAGTTAAGGTCTCTTCTATTGGAATTTCTGGAGTTGTTAGGGAGCTTTGGCGTCAGAGACTTCATTCCTTGGCTGGGTTGGATCGATGGTATCAGTGGGCTGGACGCCAAAGCAAAGCGGGTAGCCAAAGAGCTGGATGTTTTCCTAGATAGAGTGATTCAAGATCATGTCGATTCGGAAAACAGAGACGAGAATTCTGATAAGCACATGGACCTGGTCGATGTTCTGCTTTGGATACAGAGAAACAACTCCATTGGTTTCCCCCTTGAGATGGATAGCATAAAAGCTTTAATCTTGGACATGTTTTCAGCTGGCACAGACACAACTTCCACAGTATTGGAGTGGGCAATGTCAGAATTGTTCAAACACCCAGAAGCCATGAAGAAATTGAAGAGTGAGATCAGAGAAATATCAGGCGATCAGTACGTAAACGAAGATGATCTAGACAAAATGCATTACTTGAAGGCAGTAATGAAGGAAACGTTGCGTCTACACCCACCAATCCCACTTCTTGTCCCGAGAGAATCGACCCAATGCATAAAGCTAAGGGGCTACGATATTAAACCCAAGACCCGAGTGATGATCAATGCATGGGCTATTGGGAGAGACCCAGAAGTGTGGGAAGAAGCAGAGGAGTTTCGGCCAGAAAGGTTTATGAACAGTTCGATAGATTTCAAGGGTCAGGATTTTGAGTTAATCCCATTTGGCGCAGGGAGGAGAGGATGTCCTGGAGTTGAGTTTGCAACGGTGATAAATGAGATAGGTTTAGCAAATCTGGTGCATAAATTTGAATGGATGTTGCCAAGTGGTGAGGATTTAGACATGACGGGGGCGTTTGGGTTAACCATTCATAGGAAACATCCTCTTGTAGCCACGGCAACTCCTTGTTAG 1506 46.02 MEGDLLVALIGHPVSVAGFIVLFIWLLFRQKSSSQEEQSSPPSPPTKLPIFGHLLKLGSHPHITLQSYARRHGPLFLLHLGSKPTIVVSSSEIARDVMKTHDLVFANRPKSSISDKLLYNASDISAAPYGEYWRQMRSVGVLHLLSNKRVQSFRSVREEEVKLMIEKIQRNPISVNLTETFSGLTNNVVCRVALGAKYGVGEDWIKLRSLLLEFLELLGSFGVRDFIPWLGWIDGISGLDAKAKRVAKELDVFLDRVIQDHVDSENRDENSDKHMDLVDVLLWIQRNNSIGFPLEMDSIKALILDMFSAGTDTTSTVLEWAMSELFKHPEAMKKLKSEIREISGDQYVNEDDLDKMHYLKAVMKETLRLHPPIPLLVPRESTQCIKLRGYDIKPKTRVMINAWAIGRDPEVWEEAEEFRPERFMNSSIDFKGQDFELIPFGAGRRGCPGVEFATVINEIGLANLVHKFEWMLPSGEDLDMTGAFGLTIHRKHPLVATATPC 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 365303 367138 - CmaCh10G000890.1 Cma10g00089 301405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00089 501 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Cma10g00089 501 Gene3D Cytochrome P450 26 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 SUPERFAMILY Cytochrome P450 41 500 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 Pfam Cytochrome P450 42 483 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PANTHER CYTOCHROME P450 71A21-RELATED 20 499 - -
Cma10g00089 501 PANTHER CYTOCHROME P450 71B11-RELATED 20 499 - -
Cma10g00089 501 PRINTS E-class P450 group I signature 69 88 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PRINTS E-class P450 group I signature 93 114 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PRINTS E-class P450 group I signature 184 202 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Cma10g00089 501 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00089 Cma18g00201 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00089 Cma-Chr10:365303 Cma11g00063 Cma-Chr11:322087 0 dispersed
Cma10g00089 Cma-Chr10:365303 Cma13g00764 Cma-Chr13:6619863 2.60E-155 wgd
Cma10g00089 Cma-Chr10:365303 Cma18g00750 Cma-Chr18:6731507 1.31E-111 wgd
Cma10g00089 Cma-Chr10:365303 Cma18g00200 Cma-Chr18:1079299 9.90E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00089 - - csv:101203222 758.829