Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00090 ATGGCGGCTATTTCCTTAGCTTCCGCTTCTACTTCCTCTAACCTTCTTTTCCTGCATGCCTCTGCTTCTCCCTCTTCCTCCCCTTCTTCTTCCCTCTTCGCCAAACCCTCCTCCTCCTCCGCTATTAAGCTTTCTTCCTCTTTCTTGAACCCTTCTTCTATTCGCCCTCTCACATTCTCCTCCTCCGCTGTAAACCCTCCTCGTTCCTTGACGATTCGGGCCGCCCGTGGGAAATTTGAGAGGAAGAAACCCCATGTCAATATCGGCACAATTGGGCATGTCGACCATGGTAAAACAACGCTCACTGCCGCTTTGACAATGGCTTTGAGCAAAGCCCCAAAGAAATATGACGAAATTGACGCCGCCCCTGAAGAGCGAGCTCGAGGTATTACAATTAACACCGCCACCGTCGAGTACGAAACTGAGAGCCGACATTACGCCCACGTTGATTGCCCTGGCCATGCTGATTACGTCAAGAACATGATTACTGGTGCTGCTCAAATGGATGGCGCAATTTTGGTAGTTTCGGGCGCTGATGGCCCAATGCCACAAACGAAGGAGCATATTTTGTTGGCTAAGCAAGTGGGTGTCCCCAATATGGTGGTGTTTCTCAACAAGAAGGATCAAGTTGATGACGAGGAGCTTCTGGAGCTTGTGGAATTGGAGATGCGTGAGTTGCTTTCTTCCTATGAATTCCCTGGTGATGATGTCCCAATTATTGCTGGTTCTGCTTTGTTAGCTTTGGAAGCTCTAATGGCAAACCCTGGTATTGTTAGAGGCGAAAATGAATGGGTGGATAAAATTTTTGAACTTATGGATGCTGTTGATAGCTACATTCCAATACCCGAAAGACAAACAGATCTTCCATTTTTGCTTGCTGTTGAAGATGTGTTCTCTATTACTGGTCGTGGTACTGTGGCGACCGGGCGTGTCGAAAGGGGCACGGTTAGGGTGGGAGAAACAGTGGATATTGTAGGACTAAGGGAAACTAGAAACACAACAGTGACAGGAGTGGAGATGTTTCAGAAAATTCTTGATGAGGCTTTGGCTGGGGATAATGTAGGGCTGTTGCTTAGAGGCGTTCAGAAGGCTGACATCCAAAGAGGGATGGTTCTAGCCAAGCCTGGCACTATCACCCCACACACCAAGTTTCTTGCAGTTGTGTATGTGTTGAAGAAGGAGGAGGGTGGTAGGCATTCACCCTTTTTTGCCGGTTACAGACCGCAATTTTACATGAGGACGACCGATGTCACAGGTAAGGTGACTTCGATTATGAACGACAAGGACGAGGAGTCGAAAATGGTGATGCCAGGTGACCGAGTTAAAATGGTTGTGGAACTGATTATGCCGGTGGCTTGTGAACAAGGAATGAGATTTGCCATCAGAGAAGGTGGAAAGACTGTAGGAGCTGACAGAAGATTTCATTATTGTCGGACCAGGGCGCTTGATTCCCTTTGCGTGGATGAGCCAGCTAGCTCCCGCTACAACAATCCTCCGCCGCCAAACACAGCTCCGAAGCTTATGATATTCATTCTTTGA 1539 48.15 MAAISLASASTSSNLLFLHASASPSSSPSSSLFAKPSSSSAIKLSSSFLNPSSIRPLTFSSSAVNPPRSLTIRAARGKFERKKPHVNIGTIGHVDHGKTTLTAALTMALSKAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKKDQVDDEELLELVELEMRELLSSYEFPGDDVPIIAGSALLALEALMANPGIVRGENEWVDKIFELMDAVDSYIPIPERQTDLPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVDIVGLRETRNTTVTGVEMFQKILDEALAGDNVGLLLRGVQKADIQRGMVLAKPGTITPHTKFLAVVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKTVGADRRFHYCRTRALDSLCVDEPASSRYNNPPPPNTAPKLMIFIL 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 367857 370776 + CmaCh10G000900.1 Cma10g00090 301406

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00090 512 PRINTS GTP-binding elongation factor signature 200 209 IPR000795 GO:0003924|GO:0005525
Cma10g00090 512 PRINTS GTP-binding elongation factor signature 147 157 IPR000795 GO:0003924|GO:0005525
Cma10g00090 512 PRINTS GTP-binding elongation factor signature 127 135 IPR000795 GO:0003924|GO:0005525
Cma10g00090 512 PRINTS GTP-binding elongation factor signature 163 174 IPR000795 GO:0003924|GO:0005525
Cma10g00090 512 PRINTS GTP-binding elongation factor signature 87 100 IPR000795 GO:0003924|GO:0005525
Cma10g00090 512 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 83 283 IPR000795 GO:0003924|GO:0005525
Cma10g00090 512 Pfam Elongation factor Tu domain 2 304 372 IPR004161 GO:0005525
Cma10g00090 512 SUPERFAMILY Translation proteins 284 380 IPR009000 -
Cma10g00090 512 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 120 135 IPR031157 -
Cma10g00090 512 TIGRFAM small_GTP: small GTP-binding protein domain 86 216 IPR005225 GO:0005525
Cma10g00090 512 Hamap Elongation factor Tu [tuf]. 74 478 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cma10g00090 512 Pfam Elongation factor Tu GTP binding domain 83 280 IPR000795 GO:0003924|GO:0005525
Cma10g00090 512 Gene3D Translation factors 285 413 - -
Cma10g00090 512 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 377 470 IPR009001 -
Cma10g00090 512 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 298 IPR027417 -
Cma10g00090 512 Pfam Elongation factor Tu C-terminal domain 377 470 IPR004160 -
Cma10g00090 512 TIGRFAM EF-Tu: translation elongation factor Tu 75 470 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cma10g00090 512 PANTHER ELONGATION FACTOR TU 36 470 - -
Cma10g00090 512 CDD EF_Tu 84 282 IPR041709 -
Cma10g00090 512 CDD EFTU_III 379 470 - -
Cma10g00090 512 CDD EFTU_II 290 376 IPR033720 -
Cma10g00090 512 Gene3D Translation factors 417 470 - -
Cma10g00090 512 PANTHER ELONGATION FACTOR TU-RELATED 36 470 - -
Cma10g00090 512 Gene3D - 75 282 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00090 K02358 tuf, TUFM; elongation factor Tu - csv:101202988 809.675
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00090 Cma11g00064 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00090 Cma-Chr10:367857 Cma17g01157 Cma-Chr17:8042275 0 dispersed
Cma10g00090 Cma-Chr10:367857 Cma11g00064 Cma-Chr11:325512 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g834 Blo04g00717 . . . . . Bma06g00224 . . . Cma10g00090 Cma11g00064 Car10g00079 Car11g00058 Sed08g0074 . Cpe04g01586 Bhi02g00598 Tan09g2310 Cmetu02g0003 . . . . Cla06g01704 Cam06g1892 Cec06g1941 Cco06g1945 Clacu06g1848 Cmu06g1789 Cre06g2604 Cone2ag0932 Cone16ag0071 . . . . . . . . . . . Bpe15g00654 Bma03g00766 . . Cmo10g00093 Cmo11g00067 . . . . . Cpe18g00872 . . . . . . . . . . . . . . Lsi06g01592 . . Cme02g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006341 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00090 Cma_Chr10 FPKM 9.416829 9.591929 15.42089 14.458306 150.62291 147.89682 144.265717 11.931314 12.080068 10.650579