Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00092 ATGGAAGCTGGGTGTAGATTCTACTCTGCTACGGATGAGTTCAAATTGGAAGGCAAATGGTTGGTTGATCCCAAACATCTCTTCGTCGGACCTAGAATTGGAGAGGGAGCTCATGCCAAAGTTTACGAGGGCAAGTATAAGAACCAGACTGTTGCTATCAAAATTGTTCATAAAGGGGAAACAGCTGATGAGGTTGTAAAGAAAGAAGCTCGGTTTGCTCGGGAGGTTGCAATGTTGTCTAAAGTACAACATAAAAATCTTGTCAAGTTTATTGGTGCCTGCAAGGAGCCTGTAATGGTGATAGTAACGGAGCTTTTATTAGGAGGGACCTTACGAAAGTACCTGCTCAATATGCGTCCACGGTGCTTGGACACACGCGTGGCTGTTGGTTTTGCGCTTGATATTGCTCGTGCTATGGAATGCCTTCACTCCCATGGCATCATTCATCGTGATCTGAAACCTGAGAATCTTCTGTTGACTGCAGATCACAAGACAGTTAAATTAGCTGATTTTGGCTTGGCAAGAGAAGAGTCGTTGACAGAGATGATGACTGCGGAGACGGGGACCTACCGATGGATGGCTCCAGAGTTGTATAGCACTGTGACACTAAGGCAAGGGGAGAAAAAACATTACAACCATAAAGTGGATGCCTATAGCTTTGCAATTGTGTTATGGGAACTGCTACACAACAAGTTGCCATTTGAAGGCATGTCAAATCTTCAGGCAGCATATGCCGCTGCTTTTAAGAATGTAAGGCCTAGCGCAGAGAATCTTCCTGAGGAACTGGCTATGGTTCTAACATCATGCTGGCAGGAGGATGCAAATGCTCGTCCTAATTTCTCCCAAATTATTCAAATGCTACTCAATTACCTTTACACTATTTCACCCCCTGAGCCGATGATTGCTTCCCGATTTTTCTCTTCTGAGAACACGGTGTTTCCTCCCGAGTCTCCCGGAACAAGTTCACTGATGGCAGTCCGTGATGATTCAGGGGAGACTCCGAAAGCTAAAATGGAAAATAATCCCAGAGGTTGTTTCTCCTGCTCCTATGACTGTTTCTAA 1062 45.01 MEAGCRFYSATDEFKLEGKWLVDPKHLFVGPRIGEGAHAKVYEGKYKNQTVAIKIVHKGETADEVVKKEARFAREVAMLSKVQHKNLVKFIGACKEPVMVIVTELLLGGTLRKYLLNMRPRCLDTRVAVGFALDIARAMECLHSHGIIHRDLKPENLLLTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNHKVDAYSFAIVLWELLHNKLPFEGMSNLQAAYAAAFKNVRPSAENLPEELAMVLTSCWQEDANARPNFSQIIQMLLNYLYTISPPEPMIASRFFSSENTVFPPESPGTSSLMAVRDDSGETPKAKMENNPRGCFSCSYDCF 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 373193 376936 - CmaCh10G000920.1 Cma10g00092 301408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00092 353 ProSiteProfiles Protein kinase domain profile. 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00092 353 Gene3D Phosphorylase Kinase; domain 1 15 106 - -
Cma10g00092 353 PANTHER SERINE-THREONINE PROTEIN KINASE 1 328 - -
Cma10g00092 353 ProSitePatterns Protein kinases ATP-binding region signature. 33 54 IPR017441 GO:0005524
Cma10g00092 353 CDD STKc_MAP3K-like 33 287 - -
Cma10g00092 353 Gene3D Transferase(Phosphotransferase) domain 1 108 298 - -
Cma10g00092 353 Pfam Protein tyrosine and serine/threonine kinase 31 287 IPR001245 GO:0004672|GO:0006468
Cma10g00092 353 PANTHER SERINE/THREONINE-PROTEIN KINASE HT1-LIKE 1 328 - -
Cma10g00092 353 SMART serkin_6 27 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00092 353 SUPERFAMILY Protein kinase-like (PK-like) 19 315 IPR011009 -
Cma10g00092 353 PRINTS Tyrosine kinase catalytic domain signature 103 116 IPR001245 GO:0004672|GO:0006468
Cma10g00092 353 PRINTS Tyrosine kinase catalytic domain signature 141 159 IPR001245 GO:0004672|GO:0006468
Cma10g00092 353 PRINTS Tyrosine kinase catalytic domain signature 215 237 IPR001245 GO:0004672|GO:0006468
Cma10g00092 353 PRINTS Tyrosine kinase catalytic domain signature 258 280 IPR001245 GO:0004672|GO:0006468
Cma10g00092 353 ProSitePatterns Serine/Threonine protein kinases active-site signature. 147 159 IPR008271 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00092 Cma11g00066 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00768 Cma-Chr3:5987278 Cma10g00092 Cma-Chr10:373193 2.19E-101 dispersed
Cma06g00194 Cma-Chr6:988739 Cma10g00092 Cma-Chr10:373193 1.55E-152 dispersed
Cma07g00503 Cma-Chr7:2163688 Cma10g00092 Cma-Chr10:373193 6.72E-100 dispersed
Cma10g00092 Cma-Chr10:373193 Cma14g00018 Cma-Chr14:75726 2.59E-153 dispersed
Cma10g00092 Cma-Chr10:373193 Cma11g00066 Cma-Chr11:334910 2.41E-146 wgd
Cma10g00092 Cma-Chr10:373193 Cma11g01458 Cma-Chr11:9621175 0 wgd
Cma10g00092 Cma-Chr10:373193 Cma14g00675 Cma-Chr14:3434476 0 wgd
Cma10g00092 Cma-Chr10:373193 Cma04g02680 Cma-Chr4:18179202 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68819 PF07714 PK_Tyr_Ser-Thr 2.20E-58 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00092 - - csv:101223021 686.026