Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00093 ATGGCCATGGATCCGAACCCCAAAAGTTTCCCCATCCTTTCCTACGTCATGGCTAGAATCCCCTCTCTCAGTCCCCGACCGCCGGCCGTCGAATTCGATATCGAACAGCCTGCATCTCCGCCGTCCCGCCACGCTGCGCAAAATCCTTCCGATCTATCCTCTTCCTCCTCCCAAATCGTCGATGACATGCCCCATCTGTCGGACCCGAAGGTATTGGCTTCTATGACCAACGCCATCTCTGATGTTGCTCAGACCCGATCCATCCTCAAAACCCTTGGGGAGAGACCAGATCATGAGGCTATCGATACTGCCAAGGCTAAGCTCGCTGATGTAGAAGCCAATTTGTCTGCCAAGCTCCAGGAAATCGTGCTTTCGCCTAGGCCGGCGGATGTGGAGATGCTCGAGTGGAGGGCGCTTCTTGCTGAGAGAGAGAACGAGTGCCGGCAGGCGGCGGATAAAGAGAAGCAGCTGTATAGTGCAATTGTGCAACTGGATGAGATGCACGAGGCGTATGCGAAGATGTTAAAGGAAGCGGAGCAAAGGTTGGTGAAGATTTACGAATCGGCGGAGAGAGGTCTGCAGGAGGAAAAATTGGATCCAGTAAGCGAGGAGACCAATGAGGAGGTTGCGAGGATTCTTCAGGAAGCGAATGAGAAGGAAATAGATCGAATTAATCTCTCCAGCCGACGCTTGCAGTTCTTGCCTGAAGAATTTGGACGCATTCGGGGATTGGTTGTGCTTGATATCTCCAGCAATCAACTACAGAATATCCCGGATTCAATATCTGGCTTAGAAAATCTTGAGGAGCTGAATGCCACATCCAATCTCTTGGAGTCACTGCCAGACACGATTGGCTTATTACAAAAGCTGAAACTCCTGAATGTCTCTGGGAACATGTTGCAAGCCCTTCCTGACTCAATATGCCATTGCAGGTCTTTGGTGGAGTTAGATGTGAGCTTCAACGCTCTAACGTACTTGCCAACAAATATTGGCCATGAACTGGTGAATTTGGAGAAGCTTTCTATCCAGTTAAACAAGATACGTTCACTTCCATCTTCTTTTTGTGATATGATCTCTTTGCGTTACCTGGATGCTCATTTCAACGAGCTTCATGGCCTTCCTCAGGCAATTGGGAAATTGACACAACTTGAATATCTCAACCTAGCCAGTAATTTTACTGACCTTACTGAACTTCCACACACCTTTGGTGATTTATCCAGCCTTAGGGAACTTGATCTTAGCAATAACCAGATTCACGCTCTACCTGATACATTCGGCCATCTTGAGAATTTAGAGAAACTAAACTTGGAGCAAAATCCTCTTGTAATTCCGCCAATGGAAGTGGTAAATAGTGGATTGGATGCTGTGAGGACATTCATGTCCAAGAGGTGGCTTGAAATTCTGGAGGAGGAAGATAGAAAAAGAACTCTTGAAATGGACGAACAGGTGCAGACTGGATGGCTGACGCGAAGTACCACTTGGTTGAAGTCTTACATTTCTGGGGTTTCAGAGACCGTGTCTGGTATTGTTGGATCTCCCAACAGTCCGAAAGACCCTTATCTCGAACAGCAGCTATAA 1578 47.72 MAMDPNPKSFPILSYVMARIPSLSPRPPAVEFDIEQPASPPSRHAAQNPSDLSSSSSQIVDDMPHLSDPKVLASMTNAISDVAQTRSILKTLGERPDHEAIDTAKAKLADVEANLSAKLQEIVLSPRPADVEMLEWRALLAERENECRQAADKEKQLYSAIVQLDEMHEAYAKMLKEAEQRLVKIYESAERGLQEEKLDPVSEETNEEVARILQEANEKEIDRINLSSRRLQFLPEEFGRIRGLVVLDISSNQLQNIPDSISGLENLEELNATSNLLESLPDTIGLLQKLKLLNVSGNMLQALPDSICHCRSLVELDVSFNALTYLPTNIGHELVNLEKLSIQLNKIRSLPSSFCDMISLRYLDAHFNELHGLPQAIGKLTQLEYLNLASNFTDLTELPHTFGDLSSLRELDLSNNQIHALPDTFGHLENLEKLNLEQNPLVIPPMEVVNSGLDAVRTFMSKRWLEILEEEDRKRTLEMDEQVQTGWLTRSTTWLKSYISGVSETVSGIVGSPNSPKDPYLEQQL 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 377698 381636 - CmaCh10G000930.1 Cma10g00093 301409

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00093 525 Gene3D Ribonuclease Inhibitor 325 454 IPR032675 -
Cma10g00093 525 Coils Coil 202 222 - -
Cma10g00093 525 Gene3D Ribonuclease Inhibitor 141 324 IPR032675 -
Cma10g00093 525 SMART LRR_sd22_2 405 433 - -
Cma10g00093 525 SMART LRR_sd22_2 334 365 - -
Cma10g00093 525 SMART LRR_sd22_2 241 266 - -
Cma10g00093 525 ProSiteProfiles Leucine-rich repeat profile. 243 264 IPR001611 GO:0005515
Cma10g00093 525 SUPERFAMILY L domain-like 219 442 - -
Cma10g00093 525 SMART LRR_bac_2 264 283 - -
Cma10g00093 525 SMART LRR_bac_2 243 260 - -
Cma10g00093 525 SMART LRR_bac_2 380 401 - -
Cma10g00093 525 SMART LRR_bac_2 405 424 - -
Cma10g00093 525 SMART LRR_bac_2 359 376 - -
Cma10g00093 525 SMART LRR_bac_2 334 353 - -
Cma10g00093 525 SMART LRR_bac_2 310 329 - -
Cma10g00093 525 SMART LRR_bac_2 287 306 - -
Cma10g00093 525 ProSiteProfiles Leucine-rich repeat profile. 266 287 IPR001611 GO:0005515
Cma10g00093 525 PANTHER PLANT INTRACELLULAR RAS-GROUP-RELATED LRR PROTEIN 1 4 509 - -
Cma10g00093 525 ProSiteProfiles Leucine-rich repeat profile. 407 428 IPR001611 GO:0005515
Cma10g00093 525 PANTHER LEUCINE-RICH REPEAT-CONTAINING 4 509 - -
Cma10g00093 525 MobiDBLite consensus disorder prediction 26 64 - -
Cma10g00093 525 Pfam Leucine rich repeat 382 441 IPR001611 GO:0005515
Cma10g00093 525 Pfam Leucine rich repeat 311 370 IPR001611 GO:0005515
Cma10g00093 525 Pfam Leucine rich repeat 222 277 IPR001611 GO:0005515
Cma10g00093 525 PRINTS Leucine-rich repeat signature 244 257 - -
Cma10g00093 525 PRINTS Leucine-rich repeat signature 405 418 - -
Cma10g00093 525 SMART LRR_typ_2 311 333 IPR003591 -
Cma10g00093 525 SMART LRR_typ_2 428 451 IPR003591 -
Cma10g00093 525 SMART LRR_typ_2 264 286 IPR003591 -
Cma10g00093 525 SMART LRR_typ_2 287 310 IPR003591 -
Cma10g00093 525 SMART LRR_typ_2 380 404 IPR003591 -
Cma10g00093 525 SMART LRR_typ_2 357 379 IPR003591 -
Cma10g00093 525 SMART LRR_typ_2 241 263 IPR003591 -
Cma10g00093 525 SMART LRR_typ_2 405 427 IPR003591 -
Cma10g00093 525 SMART LRR_typ_2 334 356 IPR003591 -
Cma10g00093 525 MobiDBLite consensus disorder prediction 41 62 - -
Cma10g00093 525 Coils Coil 161 181 - -
Cma10g00093 525 Coils Coil 101 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00093 - - - csv:101222309 876.315
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00093 Cma11g00070 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00093 Cma-Chr10:377698 Cma11g00354 Cma-Chr11:1747353 1.05E-11 dispersed
Cma10g00093 Cma-Chr10:377698 Cma11g00070 Cma-Chr11:342282 0 wgd
Cma10g00093 Cma-Chr10:377698 Cma18g00766 Cma-Chr18:6818649 2.28E-145 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006865 2 1 2 2 1 1 2 1 1 1 1 1 2 1 1 2 0 2 2 0 1 1 1 1 1 1 1 2 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00093 Cma_Chr10 FPKM 22.063177 24.401457 21.062635 19.449293 17.837334 16.225479 16.603313 28.626162 29.058231 28.738127