Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00096 ATGGAACGACAACGGCGGAGACGACGACGACGACCTCTGTTACTTCTACTTCAGCTCTGTATCTTCTTCATCCTCTTCTTTCCCTCTTACGCAGTTGATTTCATCTTCAATTCGTTCACAAACGGCTCGAATGGCACCGACATCATTCTCATTAGCGACGCGAGGTTCGATTCCCCTGTAATTCGCCTCAATAATGACTCAAACCCAAATTCAATCGGGCGAGCTTTCTATCACACGAAGCTGATTATGAAACCCACTTCGAATTCGACTACGATCTCTTCTTTTTCAACTACTTTCGTGTTTTCGATTTTGCTGGAAGTCGCTACTAGTCCAGGCTTCGGTATGGCCTTTGTTCTTTCCAATTCCACTTCACCCCCCGACGTCATAGCGGGTCAATACTTCGGTCTCTTCACAAATTCCACTACCCATGTCGTTGCTCCTCTTCTCGCCGTTGAATTCGACACCGGTCGAAACACGGAGTTCAACGATCCCGATGATAGCCATATCGGAATCGATTTGAACAGTATGTTGTCGATAAAAACACAGACCGCTGGGTATTTTGACCCTAATGGAGTTTTTGTTCCAATTCAGATGAGAAATGGGCAGAACCTTCGCGCTTGGATCGAATTTGATGGGTCCAATTTCGAAATCAATGTCACGATTGCCCCAATTGGAACTCCTCGTCCATCCAAACCCACTTTGAGTTTTAGGGATCCTGAAATAGCAAATTATGTATCGAATGAAATGTTTGTGGGATTTTCAGCGTCGAAGACAAAATGGGTTGAGGCGCAGAGGATTTTGGCTTGGAGTTTTAGTGACACTGGTGTTGCTAGAGAGATTAACAACACGAATTTCCCTGTGTTTATGAGAGCATCACCGCCGTCTTCCTTGTCGCCGGGATCTGTTGCCGGTATTGTAATCGGCAGTGTTGTGTTTGTGATCTTAATTTCTGGATTTGTGGGGTTTTGGTATTGGCGAAAGAACAGAGCAAGTGAAGAAGATGATGAAATTGAGGATTGGGAGCTCGAATATTGGCCTCACAGATTCTCTAACGAGGAGCTTTCACAGGCCACTGATGGATTTTCGGATAAGAATCTGTTGGGTTCCGGTGGATTTGGAAGAGTATTCAAAGGAACTTTACCAAACAACACGGAAATCGCCGTTAAGTGCGTAAATCACGATTCAAAACAGGGGTTAAAGGAATTCATGGCGGAAATCTCGAGCATGGGTAGGCTTCAACATAAAAATCTAGTCCAAATGCGAGGATGGTGTCGAAAAGGCAATGAACTAATGTTGGTATACGATTACATGCCGAATGGAAGCCTTAATCGGTGGATTTTCGACAAACCCACAACCCTGCTCGGCTGGAAACAGCGCCGCCGTGTGCTCGCTGACGTTGCAGAGGGTTTGAACTATCTCCACCATGGTTGGGACCAGGTGGTGATTCACAGAGACATAAAATCAAGCAACGTGTTAATGGATTCGGAAATGAGAGGCAGACTGGGCGATTTTGGGCTGGCGAAACTGTACCAACACGGCGAGACTCCAAATACCACTCGCGTCGTCGGGACCTTGGGGTATTTAGCGCCGGAGATTGCAACGGTGGCTACTCCGACGGCAGCTAGCGATGTGTATAGTTTTGGGGTTGTGATTCTTGAAGTAGCGTGTGGGCGGCGACCGATTGAGATGGCAGTGGAGGAAGAAGAAATGGTACTTATAGATTGGGTGAAGGATCTTTACTCCGCCGGACGGTTGATTGCGGCGGCGGACTTGCGAATCAGAGAGGAATATGAAACAGAGGAGATGGAGTTGATGTTGAAGCTTGGTTTAGCTTGTTGTCATCCAGACCCTGAACGGCGGCCGACAATGAGGGAGGTTGTGGCTGTTTTGATTGGAGAACAACAGGCAGCTGAGTCAGTGGAACTTTTGTCGGGATTGTCCGGCGGCGCTGTTGATGGCAGCCCAGAAGTTTGA 1974 47.32 MERQRRRRRRRPLLLLLQLCIFFILFFPSYAVDFIFNSFTNGSNGTDIILISDARFDSPVIRLNNDSNPNSIGRAFYHTKLIMKPTSNSTTISSFSTTFVFSILLEVATSPGFGMAFVLSNSTSPPDVIAGQYFGLFTNSTTHVVAPLLAVEFDTGRNTEFNDPDDSHIGIDLNSMLSIKTQTAGYFDPNGVFVPIQMRNGQNLRAWIEFDGSNFEINVTIAPIGTPRPSKPTLSFRDPEIANYVSNEMFVGFSASKTKWVEAQRILAWSFSDTGVAREINNTNFPVFMRASPPSSLSPGSVAGIVIGSVVFVILISGFVGFWYWRKNRASEEDDEIEDWELEYWPHRFSNEELSQATDGFSDKNLLGSGGFGRVFKGTLPNNTEIAVKCVNHDSKQGLKEFMAEISSMGRLQHKNLVQMRGWCRKGNELMLVYDYMPNGSLNRWIFDKPTTLLGWKQRRRVLADVAEGLNYLHHGWDQVVIHRDIKSSNVLMDSEMRGRLGDFGLAKLYQHGETPNTTRVVGTLGYLAPEIATVATPTAASDVYSFGVVILEVACGRRPIEMAVEEEEMVLIDWVKDLYSAGRLIAAADLRIREEYETEEMELMLKLGLACCHPDPERRPTMREVVAVLIGEQQAAESVELLSGLSGGAVDGSPEV 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 388019 389992 + CmaCh10G000960.1 Cma10g00096 301412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00096 657 ProSitePatterns Protein kinases ATP-binding region signature. 367 389 IPR017441 GO:0005524
Cma10g00096 657 SUPERFAMILY Protein kinase-like (PK-like) 339 630 IPR011009 -
Cma10g00096 657 Gene3D Transferase(Phosphotransferase) domain 1 437 643 - -
Cma10g00096 657 SMART serkin_6 361 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00096 657 CDD lectin_legume_LecRK_Arcelin_ConA 32 275 IPR001220 GO:0030246
Cma10g00096 657 Pfam Legume lectin domain 32 284 IPR001220 GO:0030246
Cma10g00096 657 ProSiteProfiles Protein kinase domain profile. 361 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00096 657 SUPERFAMILY Concanavalin A-like lectins/glucanases 31 289 IPR013320 -
Cma10g00096 657 CDD STKc_IRAK 367 630 - -
Cma10g00096 657 Gene3D Phosphorylase Kinase; domain 1 324 436 - -
Cma10g00096 657 ProSitePatterns Legume lectins beta-chain signature. 149 155 IPR019825 -
Cma10g00096 657 Gene3D - 30 289 - -
Cma10g00096 657 Pfam Protein kinase domain 362 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma10g00096 657 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.1 15 646 - -
Cma10g00096 657 ProSitePatterns Serine/Threonine protein kinases active-site signature. 481 493 IPR008271 GO:0004672|GO:0006468
Cma10g00096 657 PANTHER - 15 646 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00096 Cma-Chr10:388019 Cma13g00642 Cma-Chr13:6083816 2.73E-170 dispersed
Cma10g00096 Cma-Chr10:388019 Cma03g00415 Cma-Chr3:4475133 1.14E-175 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68820 PF00069 Pkinase 1.00E-51 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00096 - - cmo:103502376 1117.45