Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00097 ATGAACAGAAATCATAAGGCAAGAGCCGTTCTTCTTACTGCTATCGAAGTGTTCATGATTCTTCTATGTGCTGGTTGGGTTTCTCTGTGGCTATTGAAACCCACAGATCTCTGGACAAGAAAATGGCGTGTTGCTGAAAACACTGCCCGAGCCTCTGTATTTGGATACTATGGTCTCAACTTTGTGGTGTATACTTTTCCTGTTATTGCTCTCGTTATAATCGGACTGGTTTACTTGAATATCAAACCCTCCAAGCCACAAACTTGCAGGAATTTTTCAACCTTTTCCAATACTCTTTCGAACCCACTTGTTGTGAACAGCTATGTGGGTATTTTATCTGGAATTGAGCTTCTGGGTGTTGCTTTGTTTCTCCTCTTCCTGGCTTGGACGTTCTATGCTCGAATATCTAAAGATTTCAGAAAGTTGATGCCCGAAGAATCACTCAACTTGAAGATATGGGAACTCAAGTATTTAAGAGTAGCCACCAGGTTTGGTTTGCTAGCAGAGGCCTGTTTGGGGCTGCTTCTTCTGCCTGTCTTGAGAGGGTTGGCTCCATTTCGGCTAATTGGCATTCAGTTTGAAGCTTCAGTGAAGTATCACGTCTGGCTTGGCACTGCAATGGTGTTGTTTGGCACCATCCATGGCGCCAGCACCTTGTTCATCTGGGGCATCAGCAACCAGATTCAAGATCAGGTGTGGAAATGGCAGAACACCGGCCGGATTTACATCGCCGGGGAGATTACTTTGATTACAGGATTAGTGATTTGGATCACTTCCCTGCCTCAGATAAGGAGAATCAAATTTGAGATCTTCTACTACACACACCATTTATACATTGTCTTTTTTGTGTTCTTCTTGTTTCATGCTGGAGATAGACACTTTTACATAATATTTCCTGGACTTTTTCTCTTTGCCATTGATAAGATCCTCCGAATTATTCAGTCTAGAACCGAAACGTGTGTCGTCTCGGCTCGAGTCCTCCCCTGCAAAGCTGTGGAACTAACTCTACCAAAAGACCAGAGGCTGAAGTATAAACCAACTAGCGTTGTGTATGTGAAGATACCAAGGATTTCCAGATTTGAGTGGCATGCTTTCAGCTTGATTTCCAGCTCGAGTGTTGATGATGAAACAATTTCGATTGTCGTTAAATGTAATAAGTCATGGACGAAGTCTTTGTATGAGATAATCAACACCGAACGAGAGGGAGAGTCGGATCAGTTGAAGTGCATCTCCGTTGCAGTCGAGGGCCCTTATGGACCTGCCTCCTTGGACTTCCTAAGATATGATCACTTGATTCTGATTGCTGGAGGAATTGGAGTAACCCCACTTTTGAGCATTTTACAAGAGATCACTTCTATGAAGAACAACACTAAATTCATCTGCCCTGCAAGAATCCAACTTATACATGTCATGAAAAAGTCCCACGAGGTTGCGCTACTCAGCTCGATCTTACCTTTACTACTGAAACGCTTGGATGGAAAAATGCATTTGCAGCTCAAAGTATTCGTGACACAAGAACTGCAATCTGGTTCAACTCTAACCGAACTGCTAAACAAGTTCTCTCAAATGCAGACGATACACTCGAGCGTGAACCGTTCAAGCTATGCAGCACATGGGCTTGAAAGCTTAGGCTGGATGGCTGTAATTACTGGACTGATATCAATCGTGTTCTTTGTCGCCCTTATCGTCTTCAACCATATCGTCGTTCCAACCGAGAAAGCCTCCAAAAAGACAAAAGACAGAACCCCATCTTGGATCTCGGATCTTCTTCTGATGTCTTCCTTCGCTTTAGCTATCTTATCCGGGGCAGTCGTCGGGATTGTTTTACGATGGAGAAGACTGAAGAAATGTAATCTAGCACTCATCCAAAGCCAAAACCAAACCAAGAACACAACTCCAAGTTCAGTAGCAAGAGGAAGTAGACAAGAAGAACATGAAATACATTTTGGAGAAAGGCCTAACTTCATAGAGATATTCTCCAACATCAACAACCCGGCAGGCGAATCGGACATCGGCGTGATCAGCAGCGGGCCGGAGGCAATGAACTTGTCAGTAGCCAAAGCTTGTAAGCAAATGTCTGGAGGTTCAAGGAAAGGCTCAGAGAAGAACAAACAGCAATTCAGTTTCCATTCCCTCAACTTCACTCTCTGA 2151 43.79 MNRNHKARAVLLTAIEVFMILLCAGWVSLWLLKPTDLWTRKWRVAENTARASVFGYYGLNFVVYTFPVIALVIIGLVYLNIKPSKPQTCRNFSTFSNTLSNPLVVNSYVGILSGIELLGVALFLLFLAWTFYARISKDFRKLMPEESLNLKIWELKYLRVATRFGLLAEACLGLLLLPVLRGLAPFRLIGIQFEASVKYHVWLGTAMVLFGTIHGASTLFIWGISNQIQDQVWKWQNTGRIYIAGEITLITGLVIWITSLPQIRRIKFEIFYYTHHLYIVFFVFFLFHAGDRHFYIIFPGLFLFAIDKILRIIQSRTETCVVSARVLPCKAVELTLPKDQRLKYKPTSVVYVKIPRISRFEWHAFSLISSSSVDDETISIVVKCNKSWTKSLYEIINTEREGESDQLKCISVAVEGPYGPASLDFLRYDHLILIAGGIGVTPLLSILQEITSMKNNTKFICPARIQLIHVMKKSHEVALLSSILPLLLKRLDGKMHLQLKVFVTQELQSGSTLTELLNKFSQMQTIHSSVNRSSYAAHGLESLGWMAVITGLISIVFFVALIVFNHIVVPTEKASKKTKDRTPSWISDLLLMSSFALAILSGAVVGIVLRWRRLKKCNLALIQSQNQTKNTTPSSVARGSRQEEHEIHFGERPNFIEIFSNINNPAGESDIGVISSGPEAMNLSVAKACKQMSGGSRKGSEKNKQQFSFHSLNFTL 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 390200 393331 - CmaCh10G000970.1 Cma10g00097 301413

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00097 716 Gene3D - 573 714 IPR039261 -
Cma10g00097 716 Gene3D - 412 543 IPR039261 -
Cma10g00097 716 PANTHER NADPH OXIDASE 8 715 - -
Cma10g00097 716 SFLD Ferric Reductase Domain 35 716 - -
Cma10g00097 716 CDD NOX_Duox_like_FAD_NADP 321 476 - -
Cma10g00097 716 PANTHER FERRIC REDUCTION OXIDASE 8, MITOCHONDRIAL 8 715 - -
Cma10g00097 716 Pfam Ferric reductase NAD binding domain 428 689 IPR013121 GO:0016491
Cma10g00097 716 PRINTS Cytochrome B-245 heavy chain signature 268 288 IPR000778 GO:0016020|GO:0016491
Cma10g00097 716 PRINTS Cytochrome B-245 heavy chain signature 243 266 IPR000778 GO:0016020|GO:0016491
Cma10g00097 716 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 314 424 IPR017927 GO:0016491
Cma10g00097 716 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 412 485 IPR039261 -
Cma10g00097 716 Pfam Ferric reductase like transmembrane component 165 285 IPR013130 -
Cma10g00097 716 SFLD Ferric reductase subgroup (FRE) 11 716 - -
Cma10g00097 716 Pfam FAD-binding domain 322 422 IPR013112 GO:0016491
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00097 K00521 E1.16.1.7; ferric-chelate reductase [EC:1.16.1.7] - csv:101203723 1158.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01250 Cma-Chr4:6407403 Cma10g00097 Cma-Chr10:390200 2.82E-105 dispersed
Cma10g00097 Cma-Chr10:390200 Cma16g00109 Cma-Chr16:491986 4.39E-18 dispersed
Cma10g00097 Cma-Chr10:390200 Cma16g00106 Cma-Chr16:474290 2.27E-113 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g813 . . . . . . . . . . Cma10g00097 . Car10g00085 . . . . . . . . . . . . . . . . . . Cone2ag0929 Cone16ag0077 . . . . . . . . . . . . . . . Cmo10g00100 . . . . . . Cpe18g00866 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011006 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00097 Cma_Chr10 FPKM 1.777778 2.324258 12.094702 11.546765 14.049459 12.512166 14.283061 0.944976 1.234302 0.926815