Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00099 ATGGAAGAGGAGTTTCAAGGAAGGCCAGCAGAGTTACAACTGCAATGCTGCAGTGCAAGGATCATGTCACCAGAGATCGTCGAGATTGGAGACGAAAGTAAGACTATTATCAGTAGCAGTGACTGTGGTGCAACCGATGTCTATGTCGCCGTTGGTAAAGATGATATAGATGTGCTTAAATGGGCCCTTGATCATGCTGTCTCACCTGGCTGTTGTGTCTTTCTTATCCATGTTTTTCCTCCTCTCACCTACATCCCTACTCCAGGTAACCAAGATTTCTTCTTTGTTTCCTTCTTTCAGATCATAATCACAGATCAGTCAACCATTCTTACTTGCAAACCCATTTTGGTTTCAGTTGGAAGATTAGCAAGGAGTCAACTGAGCCAAGAACAACTGAGAGTGTACACCAATGAAGAAAACAATAGAAGGAGAAATCTCCTGCAGAAGTACATCCGCTTATGCACTGACGCCAAGGTGACAGTGGACACATTGCTTCTGGAGAGCAACACGACAGCCAAAGCAATCCTTCAACTAATTCCAGTACTCAACATCACCAATTTAGTCATAGGAACCAAAAATCCACTTTCCACAAGGCTATTGGGGAAAAGAATGGCGAAAGGAGAGTTTGTGAAAAAGAATGCACCAGAATGTTGCGAGGTTACCATTGTTTATGAAGGCAAAAAGGTCGATGAGCGTCACCAGGAAATGGGGTTGCTTCATTCTTCTCAAAACTCCGGTAGCCGTCGCCGGCGCTCCGGCAAGAACTTGTTCGAGTGTGTGTGCTTGTTCAGCAGCCCGTGTATCAGAGTCATGAATCCTTACGACCATAGATACGCCGATCCCAATTCCTACCGCGAGCGCCGAAGTGACCTAGTGGGTCCACAGCCTGCTGCGCCGCCGCCGATGGCAGGGCGTGAATCTATGTACAAAGGCTTTCATCCTCCTCCAGTACCATATTATGGCCGTGAAAGAGGTGGGGGAGGTGCTTTACCTAATGCTGGAGGTTTCAATGGCTTCCCGCGGTTTCAGCCTCCCGCAGGACCGTTCAATATCGGTCGCAGTGGCAATGATTTCGGTAGCGGCGGAAGGAGAATGTTTAATTCTGGGAGGGGCGGGAATATGGGTTTTGGAGGTAGACGTGGTGGAGGAACGGGATTTGAGGGGCGTGTTGGCGGAAGTGGGGCTGGACGTGGTGGTTCATCAAGAGGGGACTTAGATAACATAGTTCTTCCAAGTCAGAATTTTGGGGATTTGGTCCCTTTTGAAAAGAACTTCTACACCGAGTGTCCTTCTGTGCGTGCAATGACGGAGTCCGAAGTCAAGATGTACAGAGAGAGGCGTGATATTAGAGTGGAAGGATACGATGTCCCAAAACCGATTCGGAGTTTTCAGGAGGCAAATTTTCCTGCTTACTGCCTTGATGTGATTGCGAAATTGGGATTTGTTGAACCAACACCAATTCAGGCTCAAGGATGGCCCATGGCCATGAAAGGAAGAGATTTGATTGGCATTGCTGAAACTGGCTCTGGGAAGACTCTGGCCTATCTACTGCCAGCCTTAATACACATTAGTGCCCAGCCTCGTTTGGTGCATGGTCAAGGTCCCATTGTATTGGTGTTAGCGCCCACCAGAGAATTAGCTGTTCAAATTCAACAAGAGGTCACTAAATTTGGGTTGCGTGCAAATATTAGAAGTACTTGCATTTATGGTGGGGCTCCTAAGGGCCCTCAAATTCGTGATCTCAAAAATGGTGTTGAGATTGTTATTGCTACACCTGGTCGGCTCATAGATATGCTGGAAGCTGGCCACACAAACCTGCAGCGAGTTACTTATCTTGTTTTGGATGAAGCTGATAGAATGCTGGACATGGGATTTGAGCCTCAAATAAGGACAATCATCCGACCTGATAGGCAGACATTATATTGGAGTGCCACATGGCCAAGGGAGGTTGAAAAATTGGCTAGGCAATTTTTACATAATGCATATAAGGTGATTATTGGTTCATCAGATCTTAAAGCTAACCAGTCAATAAACCAAGTCGTCGAAGTTTTGCCAGAGGCTGAGAAATATAGAAGGTTAATAAAATTGCTTGTAGAAGTGATGGATGGTAGCCGTGTTCTGATTTTTGTGGAGACAAAAAAGGGATGTGATAAAGTAACCAGGCAATTGAGAATGGATGGATGGCCAGCTCTATCCATTCATGGGGATAAAAAGCAGGCTGAAAGGGACTTGGTTTTGTCCGAGTTTAAGAGTGGAAGAAACCCAATAATGACAGCCACTGATGTGGCTGCAAGAGGGCTTGATGAAGGTTCTATTGTGCAGTGCACGATGATTGTGAGACTGCTTGATGTGAAAGATATAAAATGTGTGATCAACTATGATTTCCCATCAAGCCTCGAGGATTATGTCCACAGAATAGGTCGAACGGGGCGTGCTGGTGCAAAGGGAACTGCATTCACATTCTTTACTCATGAGAATGCGAAACATGCCCGAGAGCTTATAAAGATACTGCGAGAAGCAGGGCAGATCGTCTCCCCTGCATTGTCTGCTTTAGCCACGTCTAGTGCCACTGGAGGTTCTAGTTCTAAATACCGCCCTCAAGGACACAGAGGCTTTGGTGGTAACCGAACAATGGTTTCAGGACCAAATGCGATCCCTATTGGTTTGACAAGACCAAGGCCTCGCTAG 2688 46.47 MEEEFQGRPAELQLQCCSARIMSPEIVEIGDESKTIISSSDCGATDVYVAVGKDDIDVLKWALDHAVSPGCCVFLIHVFPPLTYIPTPGNQDFFFVSFFQIIITDQSTILTCKPILVSVGRLARSQLSQEQLRVYTNEENNRRRNLLQKYIRLCTDAKVTVDTLLLESNTTAKAILQLIPVLNITNLVIGTKNPLSTRLLGKRMAKGEFVKKNAPECCEVTIVYEGKKVDERHQEMGLLHSSQNSGSRRRRSGKNLFECVCLFSSPCIRVMNPYDHRYADPNSYRERRSDLVGPQPAAPPPMAGRESMYKGFHPPPVPYYGRERGGGGALPNAGGFNGFPRFQPPAGPFNIGRSGNDFGSGGRRMFNSGRGGNMGFGGRRGGGTGFEGRVGGSGAGRGGSSRGDLDNIVLPSQNFGDLVPFEKNFYTECPSVRAMTESEVKMYRERRDIRVEGYDVPKPIRSFQEANFPAYCLDVIAKLGFVEPTPIQAQGWPMAMKGRDLIGIAETGSGKTLAYLLPALIHISAQPRLVHGQGPIVLVLAPTRELAVQIQQEVTKFGLRANIRSTCIYGGAPKGPQIRDLKNGVEIVIATPGRLIDMLEAGHTNLQRVTYLVLDEADRMLDMGFEPQIRTIIRPDRQTLYWSATWPREVEKLARQFLHNAYKVIIGSSDLKANQSINQVVEVLPEAEKYRRLIKLLVEVMDGSRVLIFVETKKGCDKVTRQLRMDGWPALSIHGDKKQAERDLVLSEFKSGRNPIMTATDVAARGLDEGSIVQCTMIVRLLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAFTFFTHENAKHARELIKILREAGQIVSPALSALATSSATGGSSSKYRPQGHRGFGGNRTMVSGPNAIPIGLTRPRPR 895
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 395810 402039 + CmaCh10G000990.1 Cma10g00099 301415

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00099 895 Gene3D - 664 855 IPR027417 -
Cma10g00099 895 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 605 852 IPR027417 -
Cma10g00099 895 Pfam DEAD/DEAH box helicase 485 653 IPR011545 GO:0003676|GO:0005524
Cma10g00099 895 CDD SF2_C_DEAD 677 822 - -
Cma10g00099 895 SMART helicmild6 717 813 IPR001650 -
Cma10g00099 895 CDD STK_N 47 226 - -
Cma10g00099 895 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 55 200 - -
Cma10g00099 895 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 492 664 IPR014001 -
Cma10g00099 895 Gene3D HUPs 47 206 IPR014729 -
Cma10g00099 895 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 692 852 IPR001650 -
Cma10g00099 895 MobiDBLite consensus disorder prediction 284 308 - -
Cma10g00099 895 CDD DEADc_DDX5_DDX17 473 664 - -
Cma10g00099 895 PANTHER LD32873P 364 866 - -
Cma10g00099 895 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 613 621 IPR000629 -
Cma10g00099 895 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 446 666 IPR027417 -
Cma10g00099 895 Pfam Helicase conserved C-terminal domain 688 813 IPR001650 -
Cma10g00099 895 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 364 866 - -
Cma10g00099 895 MobiDBLite consensus disorder prediction 854 895 - -
Cma10g00099 895 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 461 489 IPR014014 GO:0003724
Cma10g00099 895 Gene3D - 425 663 IPR027417 -
Cma10g00099 895 SMART ultradead3 480 680 IPR014001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00099 K12823 DDX5, DBP2; ATP-dependent RNA helicase DDX5/DBP2 [EC:3.6.4.13] - csv:101203955 972.23
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00066 Cma-Chr1:288782 Cma10g00099 Cma-Chr10:395810 3.13E-112 dispersed
Cma01g00067 Cma-Chr1:292598 Cma10g00099 Cma-Chr10:395810 2.55E-35 dispersed
Cma09g00022 Cma-Chr9:122722 Cma10g00099 Cma-Chr10:395810 3.39E-125 dispersed
Cma10g00099 Cma-Chr10:395810 Cma14g01266 Cma-Chr14:10033868 0 dispersed
Cma13g00320 Cma-Chr13:3712211 Cma10g00099 Cma-Chr10:395810 8.82E-24 dispersed
Cma10g00099 Cma-Chr10:395810 Cma14g00662 Cma-Chr14:3304316 1.07E-129 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g811 . . . . . . . . . . Cma10g00099 . Car10g00086 . . . . Bhi02g00510 . . . . . . Cla06g01693 Cam06g1881 Cec06g1928 Cco06g1933 Clacu06g1837 Cmu06g1779 Cre06g2594 Cone2ag0927 . . . . . . . . . . . Bpe07g00856 . . . . Cmo10g00101 . . . . . . Cpe18g00865 . . . . . . . . . . . . . . Lsi06g01588 . Chy02g02611 Cme02g02008
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011968 0 3 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00099 Cma_Chr10 FPKM 15.298224 17.127789 16.732941 16.993631 21.409653 19.828957 19.578959 39.337723 39.129387 37.349583