Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00102 ATGGCAGTACCAGCGGCAGTAGCAGCAAAGGAGCGGAGTCGTGGACTGGGCGCCGACGAATTGAGGGTGGATATGGCCGATGATACTTACGGCGGCGCTTCACTTCCGTCAGGTCCCGATGGCCGGAAACGCCGTGTGACCTACTTCTACGAGCCCACAATCGGCGATTATTACTACGGCCAAGGCCATCCGATGAAACCTCACCGTATCCGCATGGCCCATAACCTCATTGTTCACTACGGCCTTCATCGTCGGATGGAGATCAACCGGCCATACCCTGCCGGTTCGGAGGATATCCGGAGGTTTCACTCCGATGACTATGTTGATTTTCTCGCCTCCGTCAGCCCGGAAACGCTGTCGGATCATGCCTTCTCTCGCCATCTCAAGCGCTTTAATGTTGGCGAGGACTGCCCTGTTTTTGATGGCTTATTCGGCTTCTGCCAGGCCTCTGCTGGCGGCTCCATTGGTGCTGCCGTCAAGCTCAATCGCGGCGATGCTGATATTGCTATCAATTGGGCCGGTGGGCTTCATCATGCTAAGAAGTCTGAGGCCTCCGGTTTTTGTTACGTCAATGATATTGTGTTGGGCATTCTTGAGCTGCTGAAGTACCACAGGCGTGTATTATATATTGACATTGATGTCCATCATGGTGATGGTGTGGAGGAGGCGTTTTACACTACCGACAGGGTAATGTCGGTCTCCTTCCATAAATTTGGGGATTTCTTTCCAGGGACTGGACACATTAAGCATGTTGGGGCAGGGTCTGGTAAAAACTATGCTCTTAATGTCCCTTTGAATGATGGAATGGATGATGACAGTTTTCGTGGTCTGTTTAGGCCAATCATTCAAAAAGTCATGGAGGTGTATCAGCCAGAGGCAGTAGTACTCCAATGTGGTGCTGATTCATTAGCTGGTGATAGGTTGGGGTGCTTCAACTTATCTGTGAAGGGCCATGCAGATTGTCTTCGTTTCTTGAGATCATTTAACGTTCCTTTAATGGTATTAGGTGGTGGAGGATATACAATCCGCAACGTTGCTCGCTGCTGGTGTTACGAGACAGCGGTTGCTGTTGGAGTTGAACCAGACAACAAATTGCCTTACAACGAGTATTTCGAGTATTTTGGACCTGATTACACGCTTCACATCGAACCATCCAACATGGAGAATCTAAATTCACCTAAAGATATGGAAAAAATAAGGAACACCCTGCTGGAGCAACTCTCTAGACTCCCACATGCTCCCAGTGTACCTTTCCAGATGACTCCCTCGTCCGAAGTCCCCGAAGAGCGTTTTCTCCTCTTGAGATCATGTTGGTTCTTTGGTGGTAAGGTGGAAGAGAACATTGACCGTAGACCGAAACGCCGCATTTGGAACGGTGAGGATTATGATTCTGCACCTGAAGAAAACAGAAAGCGACCAAACATGAGTGAAGGGCATGGTAGGAGAAGTTTTGAATCGCGAAACCCACTTATGTCCTTCTATCTCCATATCCTTGCGTCGGAGCTTTCCAAGACTTATCTAACTCTTTTACGAACAAAGGAACTGCATGCTTTTATTACCAAAACACATCTTGCTTGCGACCCATTTTACGCAACTAGAATTGTCAGGCTTTACTCTATCAATAGCCGACTCAACTATGCCCGCCATGTGTTCGACAAAACTCCCAACCGAAGTGTCTACCTCTGGAACTCAATCATTCGAGCTTACGCGAAAGCCCATAAATTCGGTAATGCATTATCTCTGTTCTTTACAATGTTTGGAACTGAGACTCTGCCCGATAACTTCACTTATTCATGCATCATAAGGGTATGCGCTGAAAATTTCCATAGAGAACGGCTGAAACTTGTTCATGGACGTGTTTTAGCATCTGGGTTTGGATTAGATCCTATCTGTTGCAGCGCGCTAGTCACTGCATACTCAAATCTAGACCTTATTGAAGATGCAAGCAAGGTGTTTGATGTAATGCCTCATCCAGACTTGGTTATGTGGAATTCGATCATTTCTGGTTTTGGGTATTGCGGGTTTTGGAATCAAGGGCTCTTGCTATTCTCTAGGATGAGGAATTTGGGAGGACATCCGGATGGATACACGGTAGTTGGTGTAGCATCAGGTATAGCAGAACCAAGCTTACTGAGTACTGGTAAAGGTATTCATGGATTTTGCCTCAAGTGTAGTCTTGACTCCAATGAGCACCCTGATTTAGTTACATGGTCTGCTTTAATAACTGGGTATTCTCAATCTGGTGATTTCTGGAAGGCACTGTTTTTCTTTCAGAAACTGAATATGCAGGGCATGAAACCGGATGCCATTTTGATTGCCAGCATTTTGGCCGCTGCTGCTCAATCAGCCAACATAAGGCCTGGCATTGAGATACATGGCTATGCTCTTCGACAAGGGATAGATTCAAACGAAATGGTATCCTCTTCTCTCATAGACATGTACTCCAAGTGTGGTTATTTGAGTTTGGGAATTCGTGTTTTTCATATTATGCAACGAAAAGGTATTGTGGCATACAATTCTATAATATGGGGAATGGGTCTGCATGGGCTTGCATCTAAGGCATTGGAATCGTTTGAGGAGTTGTTGGATATTGGTCTAATGCCTAATGAGTCTACTTTCTCTGCTCTCCTCTGTGCTTGCTGTCATGCTGGGCTTAGCTCTGTTGGTAAGGCGATTTTCAGAAGGATGAGAAATGAGTTTGGCATCAAATACAGAACAGAGCATTATGTTTACATTGTAAAGCTTCTTGGAATGAGTGGGGAGTTAGAAGAGGCTTATAATCTTGTCCTGTCCTTGCCAGAACCTGTAGACTCTGGTGTATGGGGGGCTCTGCTGTCCTGCTGTGATGCTTGTGGGAACCTTGAACTGGCTGAAATTGTTGCACAGAAGCTCTTAGAAAATAATCCCCACAAAATGGCTTATAGAGTAATGCTCTCTAATATCTATGCTGGAGAAGGGCGATGGGATGATAGAAGACCTAAAGAAATTGGCTGGCTTTCCAAGCTGCTGATTCTGTTGCATTTGGCTTCACGACATAGCACCCATTGTTTGAACTGCAAGAACTTAATCTTCCTACTCTGTCGCTTCATTATGGAGGTCAACATAGCTTTGCCACTTTTAGCATCCACTGGCATCGGCATTGCCTCAAGACCCATCAACTTAGCTACCACTCCTGGTTTGCGCCACAGGACATTCTCTCCAGCTATCGTTGATGGCAACCGTAAGGCTGTCTCCAATGTCAAATTGAACTCGTTTTCATGA 3261 46.03 MAVPAAVAAKERSRGLGADELRVDMADDTYGGASLPSGPDGRKRRVTYFYEPTIGDYYYGQGHPMKPHRIRMAHNLIVHYGLHRRMEINRPYPAGSEDIRRFHSDDYVDFLASVSPETLSDHAFSRHLKRFNVGEDCPVFDGLFGFCQASAGGSIGAAVKLNRGDADIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLKYHRRVLYIDIDVHHGDGVEEAFYTTDRVMSVSFHKFGDFFPGTGHIKHVGAGSGKNYALNVPLNDGMDDDSFRGLFRPIIQKVMEVYQPEAVVLQCGADSLAGDRLGCFNLSVKGHADCLRFLRSFNVPLMVLGGGGYTIRNVARCWCYETAVAVGVEPDNKLPYNEYFEYFGPDYTLHIEPSNMENLNSPKDMEKIRNTLLEQLSRLPHAPSVPFQMTPSSEVPEERFLLLRSCWFFGGKVEENIDRRPKRRIWNGEDYDSAPEENRKRPNMSEGHGRRSFESRNPLMSFYLHILASELSKTYLTLLRTKELHAFITKTHLACDPFYATRIVRLYSINSRLNYARHVFDKTPNRSVYLWNSIIRAYAKAHKFGNALSLFFTMFGTETLPDNFTYSCIIRVCAENFHRERLKLVHGRVLASGFGLDPICCSALVTAYSNLDLIEDASKVFDVMPHPDLVMWNSIISGFGYCGFWNQGLLLFSRMRNLGGHPDGYTVVGVASGIAEPSLLSTGKGIHGFCLKCSLDSNEHPDLVTWSALITGYSQSGDFWKALFFFQKLNMQGMKPDAILIASILAAAAQSANIRPGIEIHGYALRQGIDSNEMVSSSLIDMYSKCGYLSLGIRVFHIMQRKGIVAYNSIIWGMGLHGLASKALESFEELLDIGLMPNESTFSALLCACCHAGLSSVGKAIFRRMRNEFGIKYRTEHYVYIVKLLGMSGELEEAYNLVLSLPEPVDSGVWGALLSCCDACGNLELAEIVAQKLLENNPHKMAYRVMLSNIYAGEGRWDDRRPKEIGWLSKLLILLHLASRHSTHCLNCKNLIFLLCRFIMEVNIALPLLASTGIGIASRPINLATTPGLRHRTFSPAIVDGNRKAVSNVKLNSFS 1086
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 417113 423336 + CmaCh10G001020.1 Cma10g00102 301418

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00102 1086 Pfam Histone deacetylase domain 63 354 IPR023801 -
Cma10g00102 1086 PRINTS Histone deacetylase superfamily signature 291 301 IPR000286 -
Cma10g00102 1086 PRINTS Histone deacetylase superfamily signature 206 221 IPR000286 -
Cma10g00102 1086 PRINTS Histone deacetylase superfamily signature 174 197 IPR000286 -
Cma10g00102 1086 PANTHER HISTONE DEACETYLASE 30 475 - -
Cma10g00102 1086 Pfam PPR repeat 661 690 IPR002885 -
Cma10g00102 1086 Pfam PPR repeat 631 655 IPR002885 -
Cma10g00102 1086 Pfam PPR repeat 735 762 IPR002885 -
Cma10g00102 1086 Pfam PPR repeat 561 585 IPR002885 -
Cma10g00102 1086 SUPERFAMILY Arginase/deacetylase 44 409 IPR023696 -
Cma10g00102 1086 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 558 592 IPR002885 -
Cma10g00102 1086 Gene3D Tetratricopeptide repeat domain 804 1001 IPR011990 GO:0005515
Cma10g00102 1086 Gene3D Tetratricopeptide repeat domain 481 615 IPR011990 GO:0005515
Cma10g00102 1086 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 733 767 IPR002885 -
Cma10g00102 1086 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 803 837 IPR002885 -
Cma10g00102 1086 TIGRFAM PPR: pentatricopeptide repeat domain 735 769 IPR002885 -
Cma10g00102 1086 TIGRFAM PPR: pentatricopeptide repeat domain 661 694 IPR002885 -
Cma10g00102 1086 TIGRFAM PPR: pentatricopeptide repeat domain 872 902 IPR002885 -
Cma10g00102 1086 CDD HDAC_classI 49 356 - -
Cma10g00102 1086 Gene3D Histone deacetylase domain 42 417 IPR037138 -
Cma10g00102 1086 MobiDBLite consensus disorder prediction 458 483 - -
Cma10g00102 1086 Pfam PPR repeat family 834 882 IPR002885 -
Cma10g00102 1086 PANTHER HISTONE DEACETYLASE 30 475 - -
Cma10g00102 1086 Gene3D Tetratricopeptide repeat domain 616 713 IPR011990 GO:0005515
Cma10g00102 1086 Gene3D Tetratricopeptide repeat domain 721 790 IPR011990 GO:0005515
Cma10g00102 1086 PRINTS Histone deacetylase signature 269 287 IPR003084 GO:0004407|GO:0016575
Cma10g00102 1086 PRINTS Histone deacetylase signature 252 265 IPR003084 GO:0004407|GO:0016575
Cma10g00102 1086 PRINTS Histone deacetylase signature 98 116 IPR003084 GO:0004407|GO:0016575
Cma10g00102 1086 PRINTS Histone deacetylase signature 152 172 IPR003084 GO:0004407|GO:0016575
Cma10g00102 1086 PRINTS Histone deacetylase signature 131 148 IPR003084 GO:0004407|GO:0016575
Cma10g00102 1086 PRINTS Histone deacetylase signature 193 209 IPR003084 GO:0004407|GO:0016575
Cma10g00102 1086 PRINTS Histone deacetylase signature 65 82 IPR003084 GO:0004407|GO:0016575
Cma10g00102 1086 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 659 693 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00102 K06067 HDAC1_2; histone deacetylase 1/2 [EC:3.5.1.98] - cpep:111779824 970.304
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00311 Cma-Chr2:1479622 Cma10g00102 Cma-Chr10:417113 0 dispersed
Cma10g00102 Cma-Chr10:417113 Cma20g00695 Cma-Chr20:3184059 0 dispersed
Cma03g01104 Cma-Chr3:7537313 Cma10g00102 Cma-Chr10:417113 8.28E-18 transposed
Cma10g00300 Cma-Chr10:1356186 Cma10g00102 Cma-Chr10:417113 1.82E-27 transposed
Cma10g00102 Cma-Chr10:417113 Cma11g00075 Cma-Chr11:365637 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g803 . . . . . . . . . . Cma10g00102 . Car10g00091 . . . . Bhi02g00502 . . . Hepe09g0226 . . . . . . . . . . . Cone13ag0161 . . . . . Blo13g00138 . . . . . . . . Cmo10g00106 . . . . . . . . . . . . . . . . . . . . . . Csa01g00120 Chy02g02607 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000680 1 7 2 3 3 3 4 3 3 2 2 3 4 3 3 4 3 5 4 2 3 3 3 3 3 2 3 5 7 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00102 Cma_Chr10 FPKM 1.083717 1.099131 1.092444 1.284903 1.765951 1.83711 1.948016 1.888799 2.105429 2.406256