Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00105 ATGGCATCATCAAGTTCTTACAACTCTCCTTGTGCTGCTTGCAAGTTCTTGAGAAGAAAATGCATGTCAGGTTGCATTTTTGCTCCTTATTTCCCACCAGAAGAGCCTCAAAAGTTTGCCAATGTGCACAAGATCTTTGGGGCCAGCAATGTGACAAAGCTGCTGAATGAACTTCTGCCTCACCAAAGAGAGGATGCAGTGAACTCTCTTGCGTATGAGGCCGAGGCCCGAGTCCGGGACCCGGTCTACGGCTGCGTCGGAGCCATCTCCTTCCTCCAAAGGCAAGTCCAGAGGCTCCAGAAGGAACTTGACGCTGCGAATGCCGACCTAATTCGGTACGCATGCAACGAGATACCTAATGCAGGAGTGAGTCATGTGGTTCAACCAAGCCCTGGTGCTCGCCCAAGAGCTTTGGATCAGTATCATACAAGTTCATCAACTGGGTATTACAGTCAACATCTTCCTGCTTTTCCCATGGCTTATCCACTGCCTTGGAATGAAAACTCTCCTGGAAATGACATCAATGAAGGAGGAGGGGATGGCAATATTTGA 552 49.09 MASSSSYNSPCAACKFLRRKCMSGCIFAPYFPPEEPQKFANVHKIFGASNVTKLLNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDAANADLIRYACNEIPNAGVSHVVQPSPGARPRALDQYHTSSSTGYYSQHLPAFPMAYPLPWNENSPGNDINEGGGDGNI 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 429384 429935 + CmaCh10G001050.1 Cma10g00105 301421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00105 183 PANTHER ELONGATED PETIOLULE 1 1 182 - -
Cma10g00105 183 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Cma10g00105 183 Coils Coil 89 116 - -
Cma10g00105 183 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cma10g00105 183 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 182 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00105 Cma13g00866 CCT
Cma10g00105 Cma18g00185 CCT
Cma10g00105 Cma18g00185 ECH
Cma10g00105 Cma13g00866 ECH
Cma10g00105 Cma11g00077 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00105 Cma-Chr10:429384 Cma02g00725 Cma-Chr2:4403586 2.71E-49 dispersed
Cma20g01123 Cma-Chr20:8866401 Cma10g00105 Cma-Chr10:429384 8.14E-52 transposed
Cma10g00105 Cma-Chr10:429384 Cma11g00077 Cma-Chr11:374968 1.41E-116 wgd
Cma10g00105 Cma-Chr10:429384 Cma11g01450 Cma-Chr11:9563056 2.64E-68 wgd
Cma10g00105 Cma-Chr10:429384 Cma13g00866 Cma-Chr13:7097857 2.38E-67 wgd
Cma10g00105 Cma-Chr10:429384 Cma18g00185 Cma-Chr18:954033 1.09E-64 wgd
Cma10g00105 Cma-Chr10:429384 Cma04g02687 Cma-Chr4:18208584 2.20E-65 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35678 PF03195 LOB 5.00E-42 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00105 - - cmos:111430134 352.443