Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00109 ATGGATGGCGAGACGCAGTCCGGTTCCGAGGAATTGCAGAATAGTAGATGCTCGTTTGTTTGGGATGAGAATTCGCAGCTGTACTTCCATTCCAGTAGTGGATTTTATCACGATCCTGTTGCCGGTTGGTATTATAGCAGTCGAGATGGTTCGTATTACAAATTCGAAAACGGAAGCTATGTGCTGCTTCAGATGAACGAGGATGAAGAATTTAAGACGTATCCTGATGATCCTGTTAAAGGCGAACCATGTAGACAAGTGTGTATTAGCGGCAGCGAGGATCACTCTTCATTTGAGGCCAGTGAAATTGATACTTCTAACTGCAAAGAAAGTGTTGGTGACGGACTACCATTAGAAGAAGCAGAGAGCATTGGTGGTCATGAGCACGAGAATCCTCCCACATCTTTGTGGTTAGAAGATACGCTTATTGATCTTTTTTTGTCCGGTTATTCCAATTCAGAAGTCATAGCCATTAATGACAGCATATCACCTACACCTTCAACGACTAATCATGGCTATAGCGATACCCAAATGATGGAAGGTGAAAGGTTCCAAGATGACAATTGTGCAATTGTGAATTCAAACGAAAGAGTATTAGATGGAGGCTATGATGATACTCAGAGAACAGAAGGTGAGCGGCTCCAAGACGAAAATCATACTATATTGAATCCAAACGAAAGTGTATTATTATATGAAGGTGTGTCCACGGATGAAGATAACTGGAGAGCCCAGTATGGTCAAGTCACTAATTATGGGGAAGCAATTCCCAAACTCTCTGTTGTGGATATCTGGGACTGGTCGACAGTGACGGAGTCCAGGACAGGGGGAAAGGGCAAAGTTATGAGGTTGGTTGGAAGACTGGTGAGGAAGTCTGCAAAGCTTCATCCTTCGGTGTCTTCAAATGGCGCTCTTCTTAAAACAACTCCAGTATGTGAAGTACATTTAGATTTGGTACGAGTTGCAACCGGGAAAATCTACAAGTTACATAATCCTAGTAAGAAGTATTTGACGTCCATGTCAACTTTTGATTCATCCAACCCTACAAAAGACTGGGGTTTCCCCGATTTATTAGATAGGCCAACCGATCTCACTAATAACGAGGCAAAAGTTGCAAGCACAGGCACTGTTAGCATGTCTGCATCTACGTTGGTAGACAATCTCTCTGTGACTGTAAAGTGTTCAAGCCAAAATCAATATAGAGACAGAGCTGCTGAGAGAAGAGTCCTTCATGGTGGTTTTGGTGTTGGTCCTGGGCAGAAGAATTCAGCTACTGATCATGGTGATCTAACATCACCACCCCCTTATGGCTATTCCGAGAGCAGTCCAGCTGAAGCCTTGAATATCTCATTTGGAGAAGGTAGTTACGCGCGAAAAATCTTAAAAAGCATGGGGTGGAAAGAGGGAGAGGGTCTTGGCAACAGCATGAAGGGCATGGTGGAACCACTTCAAGCTGTTGGAAATATTGGAAATGCTGGATTGGGCTGGCCTCAGGGAACCAAAAAACTCGACATCTAG 1515 43.83 MDGETQSGSEELQNSRCSFVWDENSQLYFHSSSGFYHDPVAGWYYSSRDGSYYKFENGSYVLLQMNEDEEFKTYPDDPVKGEPCRQVCISGSEDHSSFEASEIDTSNCKESVGDGLPLEEAESIGGHEHENPPTSLWLEDTLIDLFLSGYSNSEVIAINDSISPTPSTTNHGYSDTQMMEGERFQDDNCAIVNSNERVLDGGYDDTQRTEGERLQDENHTILNPNESVLLYEGVSTDEDNWRAQYGQVTNYGEAIPKLSVVDIWDWSTVTESRTGGKGKVMRLVGRLVRKSAKLHPSVSSNGALLKTTPVCEVHLDLVRVATGKIYKLHNPSKKYLTSMSTFDSSNPTKDWGFPDLLDRPTDLTNNEAKVASTGTVSMSASTLVDNLSVTVKCSSQNQYRDRAAERRVLHGGFGVGPGQKNSATDHGDLTSPPPYGYSESSPAEALNISFGEGSYARKILKSMGWKEGEGLGNSMKGMVEPLQAVGNIGNAGLGWPQGTKKLDI 504
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 451349 455593 + CmaCh10G001090.1 Cma10g00109 301425

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00109 504 MobiDBLite consensus disorder prediction 95 114 - -
Cma10g00109 504 PANTHER D111/G-PATCH DOMAIN-CONTAINING PROTEIN 10 498 - -
Cma10g00109 504 SMART G-patch_5 450 496 IPR000467 GO:0003676
Cma10g00109 504 MobiDBLite consensus disorder prediction 410 441 - -
Cma10g00109 504 MobiDBLite consensus disorder prediction 423 441 - -
Cma10g00109 504 Pfam G-patch domain 454 494 IPR000467 GO:0003676
Cma10g00109 504 CDD OCRE 18 59 - -
Cma10g00109 504 ProSiteProfiles G-patch domain profile. 452 498 IPR000467 GO:0003676
Cma10g00109 504 Pfam OCRE domain 17 61 IPR041591 -
Cma10g00109 504 PANTHER RNA-BINDING PROTEIN 10 498 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00109 - - - cmos:111429960 973.385
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma11g00081 Cma-Chr11:392947 Cma10g00109 Cma-Chr10:451349 2.75E-14 transposed
Cma10g00109 Cma-Chr10:451349 Cma11g00080 Cma-Chr11:390671 3.72E-26 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g797 . . . . . . . . . . Cma10g00109 . Car10g00098 . Sed12g2460 . . Bhi02g00494 Tan09g2285 Cmetu02g1933 . Hepe09g0222 . . Cla06g01684 Cam06g1871 Cec06g1920 Cco06g1925 Clacu06g1826 Cmu06g1769 Cre06g2585 . . Cone13ag0159 . . . . . . Blo15g00259 . . Bpe07g00853 . . . . Cmo10g00113 . . . . . . Cpe18g00856 . . . . . . . . . . . . . . Lsi06g01577 Csa01g00126 Chy02g02600 Cme02g01997
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008649 0 3 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 31
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00109 Cma_Chr10 FPKM 3.269307 3.826369 8.90129 6.651658 5.906512 6.530256 6.218015 11.788467 10.498068 10.434908