Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00119 ATGACGTCAAGTATGTTGAGTGGAGAAAGAAGGTGGACATCAGCCAGACGAGGTGGGATGACTGTTTTAGGAAAGGTTGCTGTTCCAAAACCTATAAACTTACCCAGTCAAAGGTTAGAAAATCATGGTTTGGACCCGAATGTGGAAATTGTACCCAAGGGTACCCTCAGTTGGGGCAATAAATCAACTTCATCTGCAACAAATGCTTGGGGCTCCTCATCTGGTTCTCCAAATACAGATAGTGCTTCTGGTTCACCAAGCCATCTCTGTGGTCGCCCTTCATCTGCTGGAGGTGGTACTCGTCCATCAACGGCTGGCAGTGACAGGTCCCATGAACCTCATGCTAATGCATGGGGTCCGAGTTCTAGACCATCATCTGCCTCTGGGCCTGTGACGTTAAGTCATGCATCCCTCGCATCCTTGCGCCCTCACAGTGCTGAAACTAAATCTAGTAGCTCACAATTGTCACGATTTGCAGAGACTTCTGAAAATCCAGTGGCTTGGAATTCTGCTGTGACTATAGAGAAAGTGGGAGTGATGCCATGTAAGAGTGATGGGTTTTCTTTGACATCAGGAGATTTTCCTTCGCTGGGTTCTGAGAAAGAATGTGTAGGAAAGGATGCTGAGTCACGAGATACTAGGTCTAGTGAAGGAGCTACAATGAAAGAGAGGACTGGAACTTCGGCAATCGATGACCCTAAAAATGTGACTACGAATGTTGAAAGTGCTAATTCGTGGAGAAGTGATAATCTTCCGCACAACGATGATGGGCCAAGGCCCAGTGTAGAGAAATGGCTGGGGCATCCCCAACCTTACCCTGGTGCAAATATTCCTCCCCCACATTATGATGCTTGGCATGGTTCTACAGTAAACAATCCTCAAGGTGGTGTATGGTATAGGGGCCCTCCACAAGGAGTTCCTCCATATAGAACTCCAGTTGCTCCTGGTAATTTTCCTATGGACCCATTTATGTATTATCCTCCACATATTCCCTCGGGTGGTCTTCCCAATCCCCAGCCTTCTCATGGAACTGGACCCAGGGGACATCATACTAAAACTGGAGATATATATAGACCTCCTATGCATGATGGTTTTATTCACCCAGGCATGCCAATTAGACCTGGATTTTACCCAGGTCCAGTTACCTATGAGGGATATTTCCGTCCTCCCATGGGCTACTGCAATTCAAGCGATAGAGATGCTCCATTTATGGGAATGCCTGCTGGACCTGCTGGCCCTGCTGTTTACAACAGGTACTTGGGCCAAGGCCAAATTGCATCTGAGCCTGCAAGTTCCCATCTGGTTCCAGAACAAGTAGAAGCTGGTCTTCCTTGTGATAATCAAGGACCATACAAGGTTCTTTTGAAGCAGCAGGGAAACTTAAATAGTAAGAATGAAGAAGAAAATAGGATAATCTCAACAACCACTAATCAGTTGATTGTTGAGAAGGATGACCAACAGAGGATGACTCCATGGGAGAATGACTGGGATCATAAAAAAGAAGTTGATTTGAGGAGAACATTGGAGGTGGCACCGTATTCTCAGGCTTCTGCCAACGAAGAAACTCAATCTGCTGAAAGTATGAAAGCCAAGTCTCATGGAAACGCGAAGATTGGTGATGGTTTGCAAGAAAAATCGGCTGCTGCTGCTGCTTCTGGTTTCTCTGAAGTTCCCAAACCACTGGCTACTGCCACAAAAGATTCAAGTCTGATTCAGAAGATAGAAGGATTAAATGCCAAAGCCCGGGCTTCTGATGTGCGACATGATGTTTCGCCTATTTGCAGGAGGGAGGAGTCAAATGAGTTTCAATTTAATGATGCACACTCTGATCATGTTGTTGCCCAAGAAGCTAGTGCAAGTGCTGTTTTTCCTGAAAATAGGGATTTTAATGAAGTCATAGACCCAGCCTCCACTGAATTAAGTTTGTCCACTGTAGATAGGAATGTTAAATTATACGGTGGAGCACATGTCCACAGGAGGCCTAATCGTGGAATGCAAGGGAGAAGTGATCATCATGGCCGAGGAAAAGTCAATACACGGGAGGTTGATGGGTGGCATAAAAGGCCTCTGTTGGACTCCCCAGGCATGATGGCAACTCCCAACCAGGAAAGTTCTGTGCTTGCAAGAGACGACAATGCTATAGGCGCTATTAATAAGGCTGAGTCATTTTGTTCAGATAGCCATGGAGATGTACCTACTCCATCCATGGGTGATTCAAAAGATACTCAAGCTCAGCGCACAAAGATAAGAGAGCTAGCAAAGCAGCGCACCAAACAATTGCTGGAGGAAGAGGAGGAAAGGACTAGAAAACAGAGGGCCAGGGCCTTGGCAAAACTTGAAGAATTGAACAGGCGTACAATAGCAGGGGAGGGTCCGAATCAGTGGTCTGAAAATGTTTCTAATGATGCCATAAGAAATAAGATACAAGAACCTCAAAATCTTGATGACCCAAGCACGCGTGGTAGTACTATATCTGGAGAGTATACTACAGTTTCTGATCCACACGTGGTTGCTAACAATAGTGAGTCAACTATGGGCACTAATAAAAATTCTCCCATTTTATCAGGAGATACCCAATCGAAGAAACCAAGTAGTGGCAGTAAGGAACAGGCTGTGGCACATAATCAATTGAGAACTTTGGAGCTGGAGGCAAGCATTAATGATGCAGTCCAAAAGAAGAATGCTTCGGAGGTAAATGGGGGCGGTGCATCCTTGAAGCACAAGCGTACAGGAAATAAACAAAAACCAAATATTTCATCTGAAAAGACTGAAAAGATTCCCCACTTAATTAAGGATTCAAAAGTTCAGACAGTTGTTGCTGACATTTCAGTTGAAGACGAGTCGAGTGCTATCATTACAGAACCTGTTGCTGAACATTCCACCCATGCAAGAAAGAAAAATAACAAGAGTGGGAAGAGCAGGCACAAAGTGGAAGAGACCTCGATATCTGCATCATCACCTCAAATTTCAAAAGAGGCAAATCTTACAACGGAATATGATAAACCAAAGGCTTCTCAATCGGTAATGGATCCACCTTCAGATCCACAACCGCCAATTAATGGAGATGAAAATCAGTCCAGAGAGCAGCTACTTCTGTTGCCAGTTGTAGAAACTCTTGGCAAAGGTAACGGTCAGTGGAAGTCGCAGAATTCTCGCAGGATGCCAAGAAATGCTCAAAATAGGCCAGGAGAAAAGATCCATGGGAGTGATTCTGTTATCTGGGCCCCTGTGCGATCTTTCAACAAATGTGAGATTACGGATGAAACTCTTCATAAAAATGAAGCTGGGGCTGTTACTTCATCTGTAAAGATTGATAATCAAGTGCAGAGTATGCCAAAGAACAAGCGAGCTGAAAGAGAGATATATGTACCGAAGCCAGTAGTCAAGGAAATGGCACAGCAAGGAACCATCCATCAAGATATTTTCCCCATGAACCAGGCGCAAGATGATAATAAGGAAGATTCTAGTTCCAAAAGTTCTGATAATACTCGACCTGCTGGTGCTGTTTCTGGCAATGTGGGATTTTCCACAGATCACAGAAACGGGGATGGTAGGCACCATAAACAAAGCAAGGCACATGCATCGTGGCGCCAACGGGGAGCCACAGAATATGGGCAAGGCTTACAAGACCAATCATCTTATGTTTCAAATGCTGCTGGTAGTTTTGTTCAAAAATCATCTGAATATCAAGTACCTGAGAAGGCTACTGGAAGCACCATCAATGAGTTTACGAGCCACGTTGATGAGTGGGATCCACCCGATGGATGGAATGATCCCAACTACTCGGCCTCTATCCCAGCTGTCACTGCAGCTGTTGGGAGAGACCAGGGGGTGACAAGCAGGGGGAAACGGTCCCAATTTAAGGGGCACAAGGGTGTAGGGAACAATTTTGATTTGAATGAAAAGAAACTTAGAAGTGGAGACAACGAAAAAAATTCTTCCCAATCCTTAGTGCTCGGGGCAGATCAAAAAGATGTATTTGCTGCTGCTAAAGAAAATCGGGGTGTTGGGGAGCGTTCAACATCTCATTGGCAACCCAAATCCCGGATGATTCAGCCCCACAATCATCAAAATAGCAAGCCTAGTGGTGATCAAAATGTTGAAGCTGAAGCTGGACAGACTAATAAAATGGGATCTAGGCCATTTTCACATGCCACAAAAACGAGTGATGATGTGGCCCAAAATCAGTCCGATAGGTTTACTGGTGCAAGAACCATCATGGAAGAAGGACCAGATGTTGGTCCTCATGGGGCCAGAGTAGAGAAGAAAATTTACTCCCGCAAAGATCGTCCTTACTCCCCAGTCGAAGGTCCTATCCATACCGTTGAGGTTGCTCCAGAAAATACAGATACCAGACGCGATCAAGCGTTGCCTACATTTTATCATAAAGGCAGTGAGAACAATAACCGCTTTGGACGAGGGCCAGAATCTCGTCGGGAAAGGAATTCCTCTCAACATCATAAGCAGCAGCAGCAGCATTATCCACCTGCTAATAGAGACAGGCAAAGACAAAATTTGCAGTACGAGTACCAACCAGTTGGGCCACATAATGGAAAGCCGAACATGGATAATAGACCTAAGGATACCACACAGCATTCAGGCTCAAGGTACGTGGAGAGGGGCCAAGGTCAGTCCAGAAGAGATGGTGGGAACTTCCACAAGCAACAAGGTGGACCAGTTTGA 4683 45.29 MTSSMLSGERRWTSARRGGMTVLGKVAVPKPINLPSQRLENHGLDPNVEIVPKGTLSWGNKSTSSATNAWGSSSGSPNTDSASGSPSHLCGRPSSAGGGTRPSTAGSDRSHEPHANAWGPSSRPSSASGPVTLSHASLASLRPHSAETKSSSSQLSRFAETSENPVAWNSAVTIEKVGVMPCKSDGFSLTSGDFPSLGSEKECVGKDAESRDTRSSEGATMKERTGTSAIDDPKNVTTNVESANSWRSDNLPHNDDGPRPSVEKWLGHPQPYPGANIPPPHYDAWHGSTVNNPQGGVWYRGPPQGVPPYRTPVAPGNFPMDPFMYYPPHIPSGGLPNPQPSHGTGPRGHHTKTGDIYRPPMHDGFIHPGMPIRPGFYPGPVTYEGYFRPPMGYCNSSDRDAPFMGMPAGPAGPAVYNRYLGQGQIASEPASSHLVPEQVEAGLPCDNQGPYKVLLKQQGNLNSKNEEENRIISTTTNQLIVEKDDQQRMTPWENDWDHKKEVDLRRTLEVAPYSQASANEETQSAESMKAKSHGNAKIGDGLQEKSAAAAASGFSEVPKPLATATKDSSLIQKIEGLNAKARASDVRHDVSPICRREESNEFQFNDAHSDHVVAQEASASAVFPENRDFNEVIDPASTELSLSTVDRNVKLYGGAHVHRRPNRGMQGRSDHHGRGKVNTREVDGWHKRPLLDSPGMMATPNQESSVLARDDNAIGAINKAESFCSDSHGDVPTPSMGDSKDTQAQRTKIRELAKQRTKQLLEEEEERTRKQRARALAKLEELNRRTIAGEGPNQWSENVSNDAIRNKIQEPQNLDDPSTRGSTISGEYTTVSDPHVVANNSESTMGTNKNSPILSGDTQSKKPSSGSKEQAVAHNQLRTLELEASINDAVQKKNASEVNGGGASLKHKRTGNKQKPNISSEKTEKIPHLIKDSKVQTVVADISVEDESSAIITEPVAEHSTHARKKNNKSGKSRHKVEETSISASSPQISKEANLTTEYDKPKASQSVMDPPSDPQPPINGDENQSREQLLLLPVVETLGKGNGQWKSQNSRRMPRNAQNRPGEKIHGSDSVIWAPVRSFNKCEITDETLHKNEAGAVTSSVKIDNQVQSMPKNKRAEREIYVPKPVVKEMAQQGTIHQDIFPMNQAQDDNKEDSSSKSSDNTRPAGAVSGNVGFSTDHRNGDGRHHKQSKAHASWRQRGATEYGQGLQDQSSYVSNAAGSFVQKSSEYQVPEKATGSTINEFTSHVDEWDPPDGWNDPNYSASIPAVTAAVGRDQGVTSRGKRSQFKGHKGVGNNFDLNEKKLRSGDNEKNSSQSLVLGADQKDVFAAAKENRGVGERSTSHWQPKSRMIQPHNHQNSKPSGDQNVEAEAGQTNKMGSRPFSHATKTSDDVAQNQSDRFTGARTIMEEGPDVGPHGARVEKKIYSRKDRPYSPVEGPIHTVEVAPENTDTRRDQALPTFYHKGSENNNRFGRGPESRRERNSSQHHKQQQQHYPPANRDRQRQNLQYEYQPVGPHNGKPNMDNRPKDTTQHSGSRYVERGQGQSRRDGGNFHKQQGGPV 1560
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 508260 516662 + CmaCh10G001190.1 Cma10g00119 301435

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00119 1560 MobiDBLite consensus disorder prediction 807 879 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 513 538 - -
Cma10g00119 1560 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1555 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 1339 1402 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 980 1003 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 1332 1560 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 807 874 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 230 251 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 187 258 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 56 90 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 200 219 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 513 530 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 1488 1511 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 119 163 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 1295 1309 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 334 353 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 1414 1434 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 658 678 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 1041 1067 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 1160 1177 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 953 1023 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 1141 1208 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 914 929 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 54 163 - -
Cma10g00119 1560 Coils Coil 754 785 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 891 929 - -
Cma10g00119 1560 PANTHER PROTEIN MODIFIER OF SNC1 1 1 1555 IPR038808 -
Cma10g00119 1560 Pfam BAT2 N-terminus 13 135 IPR009738 -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 723 746 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 1472 1487 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 1273 1319 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 663 678 - -
Cma10g00119 1560 MobiDBLite consensus disorder prediction 1042 1057 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00119 - - - csv:101207575 2533.06
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00119 Cma11g00088 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00119 Cma-Chr10:508260 Cma11g00088 Cma-Chr11:425970 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g781 . . . . . . . . . . Cma10g00119 Cma11g00088 Car10g00106 Car11g00079 Sed08g0103 . Cpe04g01566 Bhi02g00478 Tan09g2266 Cmetu02g1512 . Hepe09g0213 . . Cla06g01673 Cam06g1861 Cec06g1911 Cco06g1916 Clacu06g1817 Cmu06g1758 Cre06g2575 . . . . . . . . . Blo15g00262 . . Bpe07g00848 . . . . Cmo10g00123 Cmo11g00088 . . . . . Cpe18g00849 . . . . . . . . . . . . . . Lsi06g01564 Csa01g00136 Chy02g02591 Cme02g01988
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006102 0 1 1 0 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 5 1 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00119 Cma_Chr10 FPKM 12.704961 13.206799 15.462915 16.305937 14.424078 13.047566 14.139421 19.361992 17.337769 15.669438