Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00121 ATGATATCAGCTGACATTGTGGACTTGTCAAGTGATGATGAGGAAGGATCAAACCTGAAAGCCGTGAAGTTGGAGCCAGATGTTGTTGGGGCTGTGATGCTACCAAAAGAGCACACGAAGAAAGATGTCATCAAACATGAAAAACCAAATACTGAATTTGTCAGTCAAAGATTTGATGAAAATAGGAGCCCCAATGTTTTGAGTGCTGGTCAAAGTAGCTCTAGTATATTGGATCAGGTGCCATCTCCAGCTGATGATTCTGGCCTTACATCCCCATCTCCCTTGTGTCCTGCACCAGTTTGTCGACAGTTCTGGAAAGCTGGCAACTATGATGATGCAGTTGCTGCTAAAGTCACTGTTCAAAGTTCCAAAGGCCATCTCCATGTCCACCCTATGTTCCTTCATTCGAATGCTACTTCACACAAATGGGCCTTTGGAGCTGTTGCGGAGCTGCTTGATAATGCTGTTGATGAGATCCCCAATGGAGCTACCTTTGTCAATGTGGATAAAATCTTGAATGCAAGAGATGGAAGTCCTGCTTTGTTAATTCAAGATGATGGAGGTGGAATGGATCCTGAAGCAATGAGGAGGTGTATGAGTTTTGGATTTTCAGACAAGAAGTCAAAATCAGCTATTGGACAATATGGAAATGGTTTCAAAACAAGCACTATGAGACTTGGTGCAGATGTCATTGTCTTCAGTCGACACGTGAATAATAGGGTATCAACGCAAAGCATTGGTCTTCTATCCTATACATTTTTGAGCCGTTCAGGCTACAACAGAATTGTAGTGCCTATGGTAGATTATGAATATAACAAAGCAAGTGGCAAAATGGAAATATTGCATGGCAAGGAGCATTTTATGTCTAACCTTTCCACACTTCTGCAGTGGTCGCCATACTCATCAGAAGCTGAACTTCTTAAGCAATTTGATGATATTGGGTCTCATGGCACAAAAGTAATCATCTATAATTTGTGGTATAATGGAGACCGCAGAATGGAGCTGGACTTTGATACAGATCCAGAGGACATTTTCATTGGTAGAGATATTAAAAAAATTGACACTCTGCGTGCATCGAAGGCAATCTGTGAGCAGCACATTGCTAATCAGTTGCAATATTCTCTTCGTGAATATTTATCCATCTTGTACTTGCGGATATCGGAGAATTTCAAAATAGTATTGCGTGGGAGGGCTGTTCTGCATCGTAATCTTGCCGATGATCTCAAATTTATCGAATACATTTTGTATAAGCCTCAAAGTGGTGGATTTGTAGAGGGTGTGGTTGTTACTACAATTGGGTTCCTGAAGGAGGCCCCACATGTCAATATACACGGCTTTAATGTGTACCACAAAAATCGTTTGATTCTGCCATTTTGGAGGGTTGTGAGCTATTCAGACAATAGAGGAAGAGGCGTTGCTGGTGTTCTCGAAGCAAATTTTATTGAGCCTACACATAATAAACAAGACTTTGAGAGAACTTCTCTTTTCCAGAAACTTGAAACTCGTTTGAAAGAGATGACTTGGGAGTACTGGGATTATCATTGTGGACTCCTTGGGTATTGTGTTAAGAAACAACTTCGCGTGACATCATCCTCACAGATACCATCCAGCATCACAGTACCTGCTGGTACAGAAAATCCTCACATATTGAAACAATGCTTTCCAGTTACAGTCACAGAGGTTAGAGAAAGAGCACGTGGGAGGTCTGAACAATGTACACTGGAATCCCAGGGAAAATCTAGAGAAGGAGTATGTATCAAAAGAAAGGCAGATGTTTTGGTAGAAGATGGACAGTCTGTTCGTGCTAATCAACCAAAAAATCAGCAGGCTGTTATTTTGTTGGAAGAAAATAGGAAGCTCCGTGCAAAATGTTCAGACTATGAAAAGCGTAAGGAAGAACTTAATCTCAAGGCAACGCAAATTAGGAGAAACGTACGGGAAGTCGAACTCGAGATCCAGCGGCTGTTGGATGAGTTAAAATCTATGGAAGCAGTGAAGGTTGAAGGCATTGTTTTCGGTATCGGAAAGTGGATTTGGTATATCCTGAGATGTGCTTTTGAAAAGTGGCTTTTAGACAAGTGGTTGCGTCGTATTCGGTACAAAACTTTTGCTATATAA 2118 41.31 MISADIVDLSSDDEEGSNLKAVKLEPDVVGAVMLPKEHTKKDVIKHEKPNTEFVSQRFDENRSPNVLSAGQSSSSILDQVPSPADDSGLTSPSPLCPAPVCRQFWKAGNYDDAVAAKVTVQSSKGHLHVHPMFLHSNATSHKWAFGAVAELLDNAVDEIPNGATFVNVDKILNARDGSPALLIQDDGGGMDPEAMRRCMSFGFSDKKSKSAIGQYGNGFKTSTMRLGADVIVFSRHVNNRVSTQSIGLLSYTFLSRSGYNRIVVPMVDYEYNKASGKMEILHGKEHFMSNLSTLLQWSPYSSEAELLKQFDDIGSHGTKVIIYNLWYNGDRRMELDFDTDPEDIFIGRDIKKIDTLRASKAICEQHIANQLQYSLREYLSILYLRISENFKIVLRGRAVLHRNLADDLKFIEYILYKPQSGGFVEGVVVTTIGFLKEAPHVNIHGFNVYHKNRLILPFWRVVSYSDNRGRGVAGVLEANFIEPTHNKQDFERTSLFQKLETRLKEMTWEYWDYHCGLLGYCVKKQLRVTSSSQIPSSITVPAGTENPHILKQCFPVTVTEVRERARGRSEQCTLESQGKSREGVCIKRKADVLVEDGQSVRANQPKNQQAVILLEENRKLRAKCSDYEKRKEELNLKATQIRRNVREVELEIQRLLDELKSMEAVKVEGIVFGIGKWIWYILRCAFEKWLLDKWLRRIRYKTFAI 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 520991 536558 - CmaCh10G001210.1 Cma10g00121 301437

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00121 705 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 146 242 - -
Cma10g00121 705 Pfam Morc6 ribosomal protein S5 domain 2-like 373 511 IPR041006 -
Cma10g00121 705 MobiDBLite consensus disorder prediction 56 89 - -
Cma10g00121 705 Gene3D - 132 336 IPR036890 -
Cma10g00121 705 PANTHER HISTIDINE KINASE-, DNA GYRASE B-, AND HSP90-LIKE ATPASE FAMILY PROTEIN 3 664 - -
Cma10g00121 705 MobiDBLite consensus disorder prediction 45 91 - -
Cma10g00121 705 PANTHER ZINC FINGER CW-TYPE COILED-COIL DOMAIN PROTEIN 3. 3 664 IPR045261 GO:0016887
Cma10g00121 705 Coils Coil 610 665 - -
Cma10g00121 705 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 144 346 IPR036890 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00121 - - - cmo:103502402 1110.9
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00121 Cma-Chr10:520991 Cma11g00020 Cma-Chr11:85836 9.77E-147 dispersed
Cma10g00121 Cma-Chr10:520991 Cma16g00638 Cma-Chr16:3295871 6.13E-129 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g776 . . . . . . . . . . Cma10g00121 . Car10g00108 . . . . Bhi02g00461 Tan09g2260 . . Hepe09g0210 . . Cla06g01670 Cam06g1859 Cec06g1908 Cco06g1913 Clacu06g1815 Cmu06g1756 Cre06g2573 . Cone16ag0091 . . . . . . . . . . . . . Bma08g00093 . Cmo10g00125 . . . . . . Cpe18g00848 . . . . . . . . . . . . . . Lsi06g01563 Csa01g00140 . Cme02g01985
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003763 0 11 0 1 1 1 1 1 1 0 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 6 2 2 46
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00121 Cma_Chr10 FPKM 6.883814 7.470159 8.370538 8.964989 9.725715 10.25307 11.365759 12.941609 11.734483 12.798515