Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00125 ATGGCGTTGAATGTCCTTGCGCCGCTTGAAATGAAGGCACTCTCCTTCTTAGACTCCTCCAGATCCAGACACTTCACCAAGCTTCAAGGAGCATCATCCTTGAAGGATTGTAGAACTATTGTTCAGAAAAGGATTCACTGTTCATCACAGCCTCCTCCTCCTCCAGCTTGGCCTGGACGAGCAGTCACAGAGCCGCAACATAAGAAATGGGAAGGCCAGAAGCCGATCTCCATTTTAGGATCCACTGGTTCCATTGGAACTCAGACATTGGATATTGTGGCAGAGAATCCTGAGAAATTTAGAGTTGTGGCACTTGCAGCTGGCTCTAACATAACTCTTCTTGCGGATCAGGTGAAAACATTTAAACCTCAGATAGTTGCTGTAAGAAATGAGTCCTTAATCGATGAGCTCAAAGAGGCTTTGGCTGATCTTGATGAAAAGCCTGAGATTATCCCTGGCGAGCAGGGAGTAATTGAGGCTGCAAGACACCCAGACGCAGCCACGGTTGTTACAGGAATTGTAGGTTGTGCTGGACTAAAGCCTACCGTTGCTGCAATTGAAGCTGGGAAAGACATAGCCTTGGCCAATAAAGAGACTCTGATTGCTGGTGGTCCCTTTGTTCTTCCCCTTGCCCACAAGCATAATGTAAAAATCCTTCCTGCCGATTCAGAACATTCAGCAATATTCCAGGGACTGTCCGAGGGTGCACTTCGCCGCATTATATTGACTGCATCTGGCGGGGCTTTCAGAGACTTGCCGGTTGAAAAGTTGAAGGACGTTAAAGTTGCAGATGCTTTAAAGCATCCCAACTGGAGCATGGGAAAGAAAATCACTGTTGACTCCGCTACTCTTTTCAACAAGGGTTTAGAAGTGATTGAAGCACACTATTTATTTGGAGCAGAATACGATAACATTGAGATTGTTATCCACCCGCAATCGATCATACATTCAATGGTAGAAACACAGGATTCATCTGTTTTAGCTCAATTGGGTTGGCCTGATATGCGCTTGCCCATTCTATACACCATAACATGGCCAGATAGAATACACTGCTCTGAAATAACTTGGCCTCGCCTTGATCTTTGCAAGCTAGGATCACTCACATTCAAAACTCCAGACAATGTAAAATACCCATCCATGGATCTGGCCTATGCTGCTGGACGGGCGGGAGGAACCATGACTGGAGTCCTGAGTGCAGCTAATGAGAAGGCGGTGGAAATGTTCATCGATGAAAAAATCAGCTACTTGGATATTTTCAAGATTGTGGAGCTAACATGTGAAAAACATCGAAATGAATTGATCAGTGCGCCTTCCCTTGAGGAGATCGTACATTATGACTCGTGGGCAAGGGTTTACGCTGCTAGTTTGCAGTCCTCCTCTTCTTTTAGCCCTCTGCATGACCGCCGTCTTGTGTTCACCTGCAACAAGGTCAATTAG 1437 45.93 MALNVLAPLEMKALSFLDSSRSRHFTKLQGASSLKDCRTIVQKRIHCSSQPPPPPAWPGRAVTEPQHKKWEGQKPISILGSTGSIGTQTLDIVAENPEKFRVVALAAGSNITLLADQVKTFKPQIVAVRNESLIDELKEALADLDEKPEIIPGEQGVIEAARHPDAATVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNVKILPADSEHSAIFQGLSEGALRRIILTASGGAFRDLPVEKLKDVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIVIHPQSIIHSMVETQDSSVLAQLGWPDMRLPILYTITWPDRIHCSEITWPRLDLCKLGSLTFKTPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKISYLDIFKIVELTCEKHRNELISAPSLEEIVHYDSWARVYAASLQSSSSFSPLHDRRLVFTCNKVN 478
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 551785 556934 - CmaCh10G001250.1 Cma10g00125 301441

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00125 478 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 74 222 IPR036291 -
Cma10g00125 478 Hamap 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 76 456 IPR003821 GO:0008299|GO:0030604|GO:0046872
Cma10g00125 478 Gene3D - 66 222 - -
Cma10g00125 478 Coils Coil 127 147 - -
Cma10g00125 478 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase 76 204 IPR013512 GO:0070402
Cma10g00125 478 Pfam 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain 218 298 IPR013644 GO:0005515
Cma10g00125 478 SUPERFAMILY 1-deoxy-D-xylulose-5-phosphate reductoisomerase, C-terminal domain 363 457 IPR036169 -
Cma10g00125 478 Pfam DXP reductoisomerase C-terminal domain 330 451 IPR026877 -
Cma10g00125 478 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE 1 460 IPR003821 GO:0008299|GO:0030604|GO:0046872
Cma10g00125 478 PANTHER 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE-RELATED 1 460 - -
Cma10g00125 478 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 198 333 - -
Cma10g00125 478 Gene3D - 375 460 - -
Cma10g00125 478 TIGRFAM Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 74 453 IPR003821 GO:0008299|GO:0030604|GO:0046872
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00125 K00099 dxr; 1-deoxy-D-xylulose-5-phosphate reductoisomerase [EC:1.1.1.267] - csv:101207716 841.647
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g745 . . Bda06g00595 . . . . . . . Cma10g00125 . . . . . . . . . . . . . Cla06g01661 Cam06g1846 Cec06g1897 Cco06g1902 Clacu06g1805 Cmu06g1746 Cre06g2565 Cone2ag0907 Cone16ag0103 . . . . . . . . . . Bpe07g00836 . . . . Cmo10g00130 . . . . . . Cpe18g00844 . . . . . . . . . . . . . . . Csa01g00150 Chy02g02578 Cme02g01980
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009834 1 1 1 0 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00125 Cma_Chr10 FPKM 32.591778 35.426292 79.325371 76.06134 45.468895 48.953823 47.744099 60.625252 65.414528 62.719433