Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00126 ATGGTTGTCATTTTCTGCTTGGTATTGCTTCCGTTAGATTCTGGTTCCCCGCTGATTTTGAAAAATTATGAGATGCCGGGAATTGTCATGGATGAGATTAATGAAGAAAGGACTGTGAATAAACACAACGGTTCTTCAACTCATATGGAAGAGTCGTATGGAAACAAGTCGCCGAGGAGCGGGTTGAGTCTTCAGAGCCCTGGAAGTGTTCATGTCCATTTCCCTGTTGATGGCTTGGTTGATACCTCTATTGAGAAGCTCTATGAAAATGTTTGTGATATGCAAAGTTCGGATCGGTCACCTTCAAGGCGTAGCTTTGGTTCTGATGGTGAGGAATCCAGGATTGATTCTGAACTAAATCATCTTGTAGGGGGAGAGATGAGGGAGGTAGAGATAATAAAGGAGGAAGAGGAGATTGTTGAGAAGCCTGGACATAACTTGCCTAGTGAATCTATGAATCATTCACCATCTGCCGATAAGAAGGAGAAAACAGAAAATATGCAACCTGGGAGCTCGAAACGTCTTTCTTCTGGAAGAAAAGCTCCTCACCTGCATTTGGACCTGGAGACATCGTCGAAATCAAGTCCCAGGGGCAAGCGTTTGTCTGATAAGCCCCCTTTTAGCAGGAAGAATGAAAAGAATTTGAAAAGTCCAGTTGCTAGTCACTCAAAGAAACCGAAAGATTCCCCTTTGAGAGGCTCAAAACTGCTGAATGGAACGGAGGATTTCAATGAATCAACGATGGATAATCCTGATCTAGGACCCTTTCTACTTAAGCAAGCAAGGAATTTAGTTTCTTCAGGGGAAAATCTGCAGAAAGCGCTTTTATTAGCTCTTCGTGCTGCAAAATCTTTTGAGCTATCTGCAAATGGGAAACCCAACTTAGAACTTGCGATGTGTTTGCACGTGACAGCAGCAATATACTGCAGCTTAGGCCAATACAGTGAGGCAGTACCTCTATTGGAGCATTCCATTGAGATTCCTGCCATCGAGGAAGGCCACGAGCATGCACTGGCAAAATTTGCAGGCCACATGCAGTTGGGTGATACCTATGCAATGTTGGGCCAGCTGGAAAATTCTCTAGTCTGTTATACAACTGGTTTAGAGGTGCAGAAACGAGTGCTAGGAGAATCCGACCCCAGAGTTGGTGAGACGTATAGATATTTAGCTGAAGCCCATGTTCAAGCCTTGCGATTTGATGAGGCTGAGAAATTTTGTCAAATGGCTCTTGATATTCACAAAAAGAATGTTGGTCCTGCTTCTCTTGAGGAGGCTGCAGATAGAAGGCTTATGGGTCTCATATGTGAAACGAAAGGAGACCATGAAGCTGCGCTTGAGCATCTAGTCTTAGCCAGCATGGCCATGGTGGCCAATGGCCAGGAGACTGATGTGGCTGCAGTTGATTGCAGTATTGGAGATTCATACCTATCCTTGTCACGTTATGACGAGGCTGTTTTTGCCTATCAGAAAGCCCTCACTGTTTTCAAGACGACGAAGGGAGAAAACCATCCAGCAGTTGGTTCGGTATTTGTTCGTCTTGCTGATTTATACAACAAGACTGGAAAAATGAGGGAGTCAGAATCATACTGTGAAAACGCCCTTCGAATTTACGAAAAGCCTGTCCCTGGTATTCCTCCAGAGGAGATTGCCAGTGGTCTTACTGATATTGCTGCTATTTATGAATCAATGAATGAAGTTGAGCAAGCAGTCAAATTATTACACAAGGCATTGAAAATATATAATGATGCCCCCGGACAGCAAAACACCATTGCTGGAATTGAAGCCCAGATGGGTGTCTTGTATTATATGTTGGGGAAATATTCTGAATCTTACGACTCATTCAATAATGCAATTCCTAAGCTCCGCAGCAGCGGAGAGAAAAAATCTGCTTTTTTTGGTATAGCCCTTAATCAAATGGGGCTTGTGTGTGTTCAGAAATACGCCATAAACGAAGCCGTGGAGTTATTTGAAGAAGCCAAGAGCATACTAGAAAAAGAATATGGACCTTATCATCCCGATACTCTCGGGGTATACAGCAACCTTGCTGGAACATACGATGCGATTGGCAGGTTGGATGATGCAATTGAAATCTTGGAGTATGTTGTTGGCATGCGGGAGGAAAAACTTGGGACAGCAAATCCCGACGTTGACGATGAGAAGAGGAGGTTATCCGAGTTGCTGAAAGAAGCAGGTAGAGTTCGGAGCCGAAAGGCGAGATCGCTCGAGACTCTTCTCGATTCCAATACTCAACCTGGAAACAGTAAAGCTATAAAGGTTCCAGGAGATGTGGTTCTCGACCTCTCCAACATGGCCAATGAAACCATCAAGCTTGGAGGCGGTCTTCGACAGGTTCGGCAATCGAAGTGCAATTGTTTTGGTTACGGGATCGCTTACCTTCATTTTTTTGATTTAATCTGTCAGGACCACGATGCTATTTCTGTCTCCAAAGTTGGAAAGCTGAGGTTCACGAAGCCGAACAAATATTGGGTTGAAAGCTCACAGAAAAGGTACGTGCCATGTGTGGAAGATTGTGTTCTTGGAATCGTGGTTGACTCTAGATCCGATAATTTTCTTGTTGATATTAAAGGTCCGGCATTGGCCTTTCTTCCTGTTCTTGCATTTGAAGGAGGAACCAGGCGAAACATACCCAAATTTGAGATGGGTGCCCTGCTTTATGTGAGGGTAGTGAAGGCAAACCCTGGTATGAATCCTGAGTTGGCATGCACTGATGCCAGTGGGAAAGCAGCTGGATTTGGCCTCCTAAAAGATGGCTACATGTTTGAATGTTCAACTGGCTTATCAAGAATGCTTCTAAGCTCGCCAACATGTCCAGTTCTTGAATCTTTTGGGAAAAAGCTTTCATTCGAGACAGCAGTTGGTTTGAATGGCCGAGTTTGGGTGAATGCTGATTCTCCATCCACAACCATTGTGGTTTCAAATGCACTATTGAACTCCGAGACTCTGTCTGGGGTCCAACAGAGAATCATGGTGGACATGCTCCTTAACAATTTGAAGCTGTCAAGGGCTACCATGGCGGCAACTCAATCGCCTCCTCCTTCATCGAATGACGATGACTCCCAGAACTCAGCTCCAGCTCCTGCACGAGCTACGATTGAGGATCGTGGGGATGCGAAGGCGGAGGTTGAGAAGCAAACCTCTCCGCCATCGGTGTTTGTGAACTCTGAACCAATAAGAGAGGATCAAGTGCAAAATGCCGTGAAATTTCTTCAACATCCGAGAGTAAGAGGTTCTCCTGTTGTCTACAGACGATCGTTTTTAGAAAGAAAGAATCTCACGAAGGAAGAGATTGATGAGGCATTCAGGCGTGTGCCCGACCCGCCTAATGCACAGACAGCTACTTTGAGTCAAGATGGACAGGTGAACACAGTTCAGCCACAGCCCTCTACGCAATCTCTTCAAACAGTTTCAGGTGTCGCTCCCCCTGCTGGTGGTGTATCTCACCAGGGTACCGTCACACGGTCTAGATTCCATTGGTCACAGGCCATTCTCGCTGTAGGATTATTGGCTATTTCAGGTGTTGGAACAGTTGTAGTAATCAAGAATTCTATTATTCCTAGGTTGAAATCTTGGGTGCGTAAAATTGTATTAGAAGACGAGGACATTGAGAAGAAAATTAATTCAAAACCAAGTGCAGCTGAGCAAGCAGCTGCTGCTGCCAAAGCAGCAGCAGCAGCAGCATCTGATATGGCAAAGGCGAGTCAGGAGATGCTTTATTCAAAAAATGAAGAGAAAAAGAAGTTCGAGGATTTTGCCAACTTGTTGGATGCTCAGCTTGGGCAGATGAAGTTGATGCTGAATGCCATTCAGAAATTGGAAGGAACCACGTATGGAAGAACTACTACTGTCGATCAACAAGATTATCGAATTACTGCCATGAGTTCAAAGCAGCCATATTCCAATGGCAAGGTGGAATCTAGCGTGCAATCAGCTACACCTGCCATACCTGTTGAACCCTCAGTTGCACCACACCCCAAATCTTACATGGAGATCATGGCCATGGTCCAGAGAGGAGAAAAGCCATCTAATATTAGAGACATTGATGATTTACCTCCCAACCCAAATCAACAGCCATCAAATCCTCGTCTAGCTCCTAGAGCCAAGCCTTGGGAAGTTGGTACGCATAACAATCCTGGCTTTTTCAATCAATCTCAAGAAGATGACAGTTCGAATTCCTTGGCACAAAACAATGGCGTGACCTATATGAACAACAATGCTCCAGTGCCTTGGTGGCAGAAGAGAAATGCTAATATTACAGAGATAGAAAATAAAGGGTTGAAGGTAGGCTCTTCCAATGGGCTCTCTGCTGAGAAACCAGTTCAACGTACATGGGTTCCTCCTCAGCCACGACCTGTTGCATTGCCAGAAGCAGCTGAAGCCATCCGAAGGCAAAAACCAACTATCCAGAAAGAGCAGCTTACTGACGAACATTTAGCAACACAACCAAATGTAACTGATGAGTTTCAGAAGGCCACAAAAGTTCCTGAATCTGGCGGAGCAATCGATTATGAGAACTTGGGAGTGAGCTCAAGTGAGATACAAGTGGAAGAAAATGGCTCCGGAGGACAGTGA 4590 44.97 MVVIFCLVLLPLDSGSPLILKNYEMPGIVMDEINEERTVNKHNGSSTHMEESYGNKSPRSGLSLQSPGSVHVHFPVDGLVDTSIEKLYENVCDMQSSDRSPSRRSFGSDGEESRIDSELNHLVGGEMREVEIIKEEEEIVEKPGHNLPSESMNHSPSADKKEKTENMQPGSSKRLSSGRKAPHLHLDLETSSKSSPRGKRLSDKPPFSRKNEKNLKSPVASHSKKPKDSPLRGSKLLNGTEDFNESTMDNPDLGPFLLKQARNLVSSGENLQKALLLALRAAKSFELSANGKPNLELAMCLHVTAAIYCSLGQYSEAVPLLEHSIEIPAIEEGHEHALAKFAGHMQLGDTYAMLGQLENSLVCYTTGLEVQKRVLGESDPRVGETYRYLAEAHVQALRFDEAEKFCQMALDIHKKNVGPASLEEAADRRLMGLICETKGDHEAALEHLVLASMAMVANGQETDVAAVDCSIGDSYLSLSRYDEAVFAYQKALTVFKTTKGENHPAVGSVFVRLADLYNKTGKMRESESYCENALRIYEKPVPGIPPEEIASGLTDIAAIYESMNEVEQAVKLLHKALKIYNDAPGQQNTIAGIEAQMGVLYYMLGKYSESYDSFNNAIPKLRSSGEKKSAFFGIALNQMGLVCVQKYAINEAVELFEEAKSILEKEYGPYHPDTLGVYSNLAGTYDAIGRLDDAIEILEYVVGMREEKLGTANPDVDDEKRRLSELLKEAGRVRSRKARSLETLLDSNTQPGNSKAIKVPGDVVLDLSNMANETIKLGGGLRQVRQSKCNCFGYGIAYLHFFDLICQDHDAISVSKVGKLRFTKPNKYWVESSQKRYVPCVEDCVLGIVVDSRSDNFLVDIKGPALAFLPVLAFEGGTRRNIPKFEMGALLYVRVVKANPGMNPELACTDASGKAAGFGLLKDGYMFECSTGLSRMLLSSPTCPVLESFGKKLSFETAVGLNGRVWVNADSPSTTIVVSNALLNSETLSGVQQRIMVDMLLNNLKLSRATMAATQSPPPSSNDDDSQNSAPAPARATIEDRGDAKAEVEKQTSPPSVFVNSEPIREDQVQNAVKFLQHPRVRGSPVVYRRSFLERKNLTKEEIDEAFRRVPDPPNAQTATLSQDGQVNTVQPQPSTQSLQTVSGVAPPAGGVSHQGTVTRSRFHWSQAILAVGLLAISGVGTVVVIKNSIIPRLKSWVRKIVLEDEDIEKKINSKPSAAEQAAAAAKAAAAAASDMAKASQEMLYSKNEEKKKFEDFANLLDAQLGQMKLMLNAIQKLEGTTYGRTTTVDQQDYRITAMSSKQPYSNGKVESSVQSATPAIPVEPSVAPHPKSYMEIMAMVQRGEKPSNIRDIDDLPPNPNQQPSNPRLAPRAKPWEVGTHNNPGFFNQSQEDDSSNSLAQNNGVTYMNNNAPVPWWQKRNANITEIENKGLKVGSSNGLSAEKPVQRTWVPPQPRPVALPEAAEAIRRQKPTIQKEQLTDEHLATQPNVTDEFQKATKVPESGGAIDYENLGVSSSEIQVEENGSGGQ 1529
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 559786 569991 - CmaCh10G001260.1 Cma10g00126 301442

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00126 1529 ProSiteProfiles TPR repeat profile. 465 498 IPR019734 GO:0005515
Cma10g00126 1529 Pfam Tetratricopeptide repeat 297 327 - -
Cma10g00126 1529 Pfam KH domain 924 972 IPR004088 GO:0003723
Cma10g00126 1529 MobiDBLite consensus disorder prediction 1382 1400 - -
Cma10g00126 1529 MobiDBLite consensus disorder prediction 1110 1143 - -
Cma10g00126 1529 Gene3D - 1057 1121 IPR036388 -
Cma10g00126 1529 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 923 1005 IPR036612 GO:0003723
Cma10g00126 1529 SUPERFAMILY Nucleic acid-binding proteins 835 927 IPR012340 -
Cma10g00126 1529 Gene3D K Homology domain, type 1 920 1003 IPR036612 GO:0003723
Cma10g00126 1529 Coils Coil 716 736 - -
Cma10g00126 1529 MobiDBLite consensus disorder prediction 42 67 - -
Cma10g00126 1529 SMART tpr_5 341 374 IPR019734 GO:0005515
Cma10g00126 1529 SMART tpr_5 383 416 IPR019734 GO:0005515
Cma10g00126 1529 SMART tpr_5 591 624 IPR019734 GO:0005515
Cma10g00126 1529 SMART tpr_5 465 498 IPR019734 GO:0005515
Cma10g00126 1529 SMART tpr_5 550 583 IPR019734 GO:0005515
Cma10g00126 1529 SMART tpr_5 298 331 IPR019734 GO:0005515
Cma10g00126 1529 SMART tpr_5 633 666 IPR019734 GO:0005515
Cma10g00126 1529 SMART tpr_5 675 708 IPR019734 GO:0005515
Cma10g00126 1529 SMART tpr_5 507 540 IPR019734 GO:0005515
Cma10g00126 1529 SUPERFAMILY TPR-like 272 709 IPR011990 GO:0005515
Cma10g00126 1529 MobiDBLite consensus disorder prediction 180 231 - -
Cma10g00126 1529 MobiDBLite consensus disorder prediction 1513 1529 - -
Cma10g00126 1529 MobiDBLite consensus disorder prediction 1501 1529 - -
Cma10g00126 1529 Pfam Pex14 N-terminal domain 1065 1109 IPR006785 -
Cma10g00126 1529 MobiDBLite consensus disorder prediction 1011 1033 - -
Cma10g00126 1529 MobiDBLite consensus disorder prediction 92 249 - -
Cma10g00126 1529 CDD S1_Rrp40 836 921 IPR037319 GO:0003723
Cma10g00126 1529 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 25 748 - -
Cma10g00126 1529 MobiDBLite consensus disorder prediction 45 67 - -
Cma10g00126 1529 Gene3D - 843 919 IPR012340 -
Cma10g00126 1529 Pfam Tetratricopeptide repeat 464 539 - -
Cma10g00126 1529 Pfam Tetratricopeptide repeat 634 701 - -
Cma10g00126 1529 Pfam Tetratricopeptide repeat 346 415 - -
Cma10g00126 1529 ProSiteProfiles TPR repeat profile. 550 583 IPR019734 GO:0005515
Cma10g00126 1529 MobiDBLite consensus disorder prediction 1348 1400 - -
Cma10g00126 1529 MobiDBLite consensus disorder prediction 1011 1064 - -
Cma10g00126 1529 Gene3D - 743 838 - -
Cma10g00126 1529 Gene3D Tetratricopeptide repeat domain 237 450 IPR011990 GO:0005515
Cma10g00126 1529 Gene3D Tetratricopeptide repeat domain 451 634 IPR011990 GO:0005515
Cma10g00126 1529 Gene3D Tetratricopeptide repeat domain 664 742 IPR011990 GO:0005515
Cma10g00126 1529 PANTHER PROTEIN KINESIN LIGHT CHAIN-RELATED 3 25 748 - -
Cma10g00126 1529 MobiDBLite consensus disorder prediction 104 144 - -
Cma10g00126 1529 MobiDBLite consensus disorder prediction 1115 1143 - -
Cma10g00126 1529 Pfam Family of unknown function (DUF5572) 1329 1378 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00126 - - - bhj:120070989 1318.91
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00126 Cma11g00097 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00580 Cma-Chr4:2948942 Cma10g00126 Cma-Chr10:559786 0 dispersed
Cma10g00126 Cma-Chr10:559786 Cma16g00526 Cma-Chr16:2682965 0 dispersed
Cma11g00097 Cma-Chr11:522626 Cma10g00126 Cma-Chr10:559786 0 transposed
Cma17g01353 Cma-Chr17:9041544 Cma10g00126 Cma-Chr10:559786 2.84E-52 transposed
Cma10g00126 Cma-Chr10:559786 Cma11g00095 Cma-Chr11:517114 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g740 . . Bda06g00593 . . . Bma06g00233 . . . Cma10g00126 Cma11g00097 Car10g00117 Car11g00097 . . Cpe04g01552 Bhi02g00439 Tan09g2242 . . Hepe09g0198 . . Cla06g01660 Cam06g1845 Cec06g1896 Cco06g1901 Clacu06g1804 Cmu06g1745 Cre06g2564 Cone2ag0905 Cone16ag0107 . . . . . . . Blo15g00269 Bda11g01660 . Bpe07g00835 . . . . Cmo10g00132 Cmo11g00097 . . . . . Cpe18g00843 . . . . . . . . . . . . . . Lsi06g01550 Csa01g00154 Chy02g02576 Cme02g01966
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003461 3 3 3 3 3 1 2 1 1 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 1 2 2 48
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00126 Cma_Chr10 FPKM 32.815487 36.748249 35.450298 36.061703 19.996483 20.201664 20.122925 49.130436 46.307281 46.371372