Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00129 ATGGCTGCTCGAGGGGTCGATTTCAAGTGGTATGACGGTTTTTTCTTGTCGATGCTCGCGATTAGTGTAGTAGTTGTTTCGATCAACTGGAAGAGGTACCATACTTGTGTACATCCCTTGCATATATGGATTTTGGTTGATTATACTACCGTCTTTGTTTTCCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAATCCTTGCACTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATCGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTTTTGAGCAAGGCCAGAAATGGGGATTCCTTATTTGGCTTCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTATTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTAGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCCGCAGGACAAGAAACAAGAGTAATGGGCCAAGATGCTGCTGCATATCATCCTGGACTTTATTTGACTCCTGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCTGTGAATGCCCTATCTGCTTAGAAGAGTTCCATGTAGGAAACGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGACGAGTGGCTTCGACTAAATGTGAAATGCCCTCGATGTCGCTGTTCGGTTTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTTCATTCTGATACTGAAAGGCCATCTGCAAGTGTTGTTACGGCCAACCGTTATATGAGACCTCAACCTTCCAGCCAAAGTTATCTGGTGAGATTGCAGGGTCTGCTTCGGCCTGTTCACACAGAAAACACTGTTGCACACGGTGATTTAGAGTCTGCTAGTGCTTTGGAAGTTGCTGAGAATGCTGAGAATGGATCTTCCCATGACCAAACTGTACCGGAAAGGTCTCCCGTAAGACCCGTGTCTTCGAGTCAGTCCACGCCACAATGCTAG 1143 45.84 MAARGVDFKWYDGFFLSMLAISVVVVSINWKRYHTCVHPLHIWILVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSILALLLYPFLWAWTAIGTLWFREAHKCLFEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCCECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLHSDTERPSASVVTANRYMRPQPSSQSYLVRLQGLLRPVHTENTVAHGDLESASALEVAENAENGSSHDQTVPERSPVRPVSSSQSTPQC 380
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 583554 588734 - CmaCh10G001290.1 Cma10g00129 301445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00129 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 355 - -
Cma10g00129 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 204 281 IPR013083 -
Cma10g00129 380 SMART ring_2 235 275 IPR001841 -
Cma10g00129 380 MobiDBLite consensus disorder prediction 346 380 - -
Cma10g00129 380 MobiDBLite consensus disorder prediction 349 380 - -
Cma10g00129 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 1 355 IPR044793 GO:0004842|GO:0010182
Cma10g00129 380 SUPERFAMILY RING/U-box 220 284 - -
Cma10g00129 380 ProSiteProfiles Zinc finger RING-type profile. 235 276 IPR001841 -
Cma10g00129 380 CDD RING-H2_RNF111_like 234 278 - -
Cma10g00129 380 Pfam Ring finger domain 234 276 IPR001841 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00129 Cma11g00101 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00129 Cma-Chr10:583554 Cma02g01160 Cma-Chr2:6840315 5.99E-13 dispersed
Cma10g00129 Cma-Chr10:583554 Cma11g00101 Cma-Chr11:543807 0 wgd
Cma10g00129 Cma-Chr10:583554 Cma18g00162 Cma-Chr18:818557 1.52E-24 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00129 K16284 - csv:101208939 708.368