Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma10g00129 | ATGGCTGCTCGAGGGGTCGATTTCAAGTGGTATGACGGTTTTTTCTTGTCGATGCTCGCGATTAGTGTAGTAGTTGTTTCGATCAACTGGAAGAGGTACCATACTTGTGTACATCCCTTGCATATATGGATTTTGGTTGATTATACTACCGTCTTTGTTTTCCGCCTGCTGATGTTTGTAGATAATGGACTTGCTGCTGGAATGGGTTTGGACTTTGGGTGGCAGCAGAGGTATGCTCGATTTTGTGGAAGAATTGTGGTCCTTTCAATCCTTGCACTTCTGCTATATCCATTTCTTTGGGCTTGGACTGCCATCGGTACTTTATGGTTTAGAGAAGCCCATAAATGTCTTTTTGAGCAAGGCCAGAAATGGGGATTCCTTATTTGGCTTCTTTTTAGCTACTGTGCACTCGTATGCATTGCTTGCATGTCATTGGGAAAGTGGTTAACTCGTAGACAAGCACTCTTATTTCGGGCGCAACAAGGGATCCCTGTATCAGAATATGGGGTCTTAGTTGACATGATCCGAGTACCTGATTGGGCTTTTGAAGCCGCAGGACAAGAAACAAGAGTAATGGGCCAAGATGCTGCTGCATATCATCCTGGACTTTATTTGACTCCTGCTCAGAGGGAAGCTGTGGAAGCACTTATTGAGGAACTTCCCAAATTCAGGTTAAAGGCTGTTCCAACAGATTGCTGTGAATGCCCTATCTGCTTAGAAGAGTTCCATGTAGGAAACGAGGTTCGTGGCCTCCCTTGTGCTCATAATTTCCATGTAGGATGCATTGACGAGTGGCTTCGACTAAATGTGAAATGCCCTCGATGTCGCTGTTCGGTTTTCCCAAACCTTGATCTTAGTGCTCTGTCCAATCTTCATTCTGATACTGAAAGGCCATCTGCAAGTGTTGTTACGGCCAACCGTTATATGAGACCTCAACCTTCCAGCCAAAGTTATCTGGTGAGATTGCAGGGTCTGCTTCGGCCTGTTCACACAGAAAACACTGTTGCACACGGTGATTTAGAGTCTGCTAGTGCTTTGGAAGTTGCTGAGAATGCTGAGAATGGATCTTCCCATGACCAAACTGTACCGGAAAGGTCTCCCGTAAGACCCGTGTCTTCGAGTCAGTCCACGCCACAATGCTAG | 1143 | 45.84 | MAARGVDFKWYDGFFLSMLAISVVVVSINWKRYHTCVHPLHIWILVDYTTVFVFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRIVVLSILALLLYPFLWAWTAIGTLWFREAHKCLFEQGQKWGFLIWLLFSYCALVCIACMSLGKWLTRRQALLFRAQQGIPVSEYGVLVDMIRVPDWAFEAAGQETRVMGQDAAAYHPGLYLTPAQREAVEALIEELPKFRLKAVPTDCCECPICLEEFHVGNEVRGLPCAHNFHVGCIDEWLRLNVKCPRCRCSVFPNLDLSALSNLHSDTERPSASVVTANRYMRPQPSSQSYLVRLQGLLRPVHTENTVAHGDLESASALEVAENAENGSSHDQTVPERSPVRPVSSSQSTPQC | 380 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 583554 | 588734 | - | CmaCh10G001290.1 | Cma10g00129 | 301445 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma10g00129 | 380 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 355 | - | - | |
Cma10g00129 | 380 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 204 | 281 | IPR013083 | - | |
Cma10g00129 | 380 | SMART | ring_2 | 235 | 275 | IPR001841 | - | |
Cma10g00129 | 380 | MobiDBLite | consensus disorder prediction | 346 | 380 | - | - | |
Cma10g00129 | 380 | MobiDBLite | consensus disorder prediction | 349 | 380 | - | - | |
Cma10g00129 | 380 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SIS3 | 1 | 355 | IPR044793 | GO:0004842|GO:0010182 | |
Cma10g00129 | 380 | SUPERFAMILY | RING/U-box | 220 | 284 | - | - | |
Cma10g00129 | 380 | ProSiteProfiles | Zinc finger RING-type profile. | 235 | 276 | IPR001841 | - | |
Cma10g00129 | 380 | CDD | RING-H2_RNF111_like | 234 | 278 | - | - | |
Cma10g00129 | 380 | Pfam | Ring finger domain | 234 | 276 | IPR001841 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma10g00129 | Cma11g00101 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma10g00129 | Cma-Chr10:583554 | Cma02g01160 | Cma-Chr2:6840315 | 5.99E-13 | dispersed | |
Cma10g00129 | Cma-Chr10:583554 | Cma11g00101 | Cma-Chr11:543807 | 0 | wgd | |
Cma10g00129 | Cma-Chr10:583554 | Cma18g00162 | Cma-Chr18:818557 | 1.52E-24 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma10g00129 | K16284 | - | csv:101208939 | 708.368 |