Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00132 ATGCATAACATTGCGTATTCTCGTTTGGGCGACCTTCAAAAATCCTTTTCTCTGTACCGGAAAGTGCCTTGGTGGGATCATATTCTTGAACCAGATTCCGATTTCGTCTTCCGATGGCACCGCATCTTCCTCGTCACTTGCTTGATCGCGCTCTTCGTCGATCCTCTCTACTTTTATCTTCCATTCATCGGAGCTCCTGGTTGTATGCAATTCAACCTCGGACTTGGCATCGTCGTCACTTTCTTCCGCACCATCGTCGATTTGTTCTCCATGTTTCATATGCTTATGAAGTTTCGCACCGCCTTCGTTGCGCCAAATTCTAGGGTTTTTGGCCGTGGAGATCTCGTTAAGGACCCTACGGCAATTGCTATGCGCTACCTCAAGAAGGATTTTGTCATCGATCTTGCCGCTACGCTTCCCCTGCCTCAGATTGTGATTTGGTTCGTGCTTCCAGCGTTAAAAAATCCAACAGCGACCCATGCCAACCACACTCTTGCTTTGATTGTGCTAATTCAATATGCCCCCAGACTGTTTGTTATATTTCCTCTGAACCGACGAATTAATAAGACCACCGGATCAATAGCCAAAACTGCGTGGGCTGGTGCAGCTTACAATCTGCTTCTCTATTTGCTGGCTAGCCATATTATAGGAGCTGCGTGGTATGTGGCATCCATTCAGCGGCAGGATGAGTGCTGGAAGATAGAATGTAGGAAGGAGATGAATACCACGCATTCTCCTTCTTGTAAGCCTTTTTTTCTGGACTGTGATAGTTTGAATGAGCCAGAACGAAAAGCGTGGCTAAGAATTACTCATGTTCTTACAAAATGTGATGCCCTAAATGACGACAAGAATTTTCAGTTTGGGATGTTTGCTGATGCGTTCACTGCCGAAGTTGCTTCAACAAACTTCATCGAGAAGTACTTCTACTGCCTTTGGTTTGGTCTTAAGAGTTTGAGTTCATATGGGCAAAATTTAGCGACCAGCACTTCTAGTGGTGAAATTTTATTTAGCATTCTGATTTGCTCAATGGGGTTGGTTCTGTTCTCACACCTCATAGGTCAAGTGCAGGGCTATCTGCAATCCACATCTGCAAGACTTGAAGAGTGGAGAGTAAAACGAAGAGACACAGAGGAATGGATGAGGCATCGACAGCTACCCATTCACTTGCAAGACCGAGTTCGTCGATTCGTTCAATATAAATGGATTGCAACTCGAGGTGTCGACGAAGAGTCGATCTTGCGCTCTTTACCTTTGGATCTTCGACGTCAAATTCAGAGGCATCTTTCTCTCGCACTTGTTCGCCGTGTTCCTTTTTTTGCACAAATGGATGCTCAGCTATTGGATGCCATATGCGAGCGTCTTGTTCAATCCTTGAATACTAAAGACACATTCATAACCCGAGAGGGAGATCCAGTAAATGAAATGCTCTTCATCATCAGAGGCCAACTAGAGAGCTCCACCACCAATGGTGGCAGGTCAGGATTCTTCAACTCCATCACCCTCAGAGCTGGTGACTTCTGCGGTGAAGAGCTACTAACATGGGCCTTAGTCCCATCCCCCAGCATAAGCTTACCCTCCTCAACTCGAACCGTGAAGTCGCTCACTGAAGTCGAGGCGTTCGCACTTCGAGCCGAAGATCTCAAGTTTGTAGCCAGCCAGTTCAAGCGCCTCCACAGCAAGAAACTCCAGCATGCTTTCAGATACTATTCCCACCAGTGGAGGACATGGGGATCTTGCTTCATACAAGCTGCTTGGAGAAGGTATGTGAAAAGAAAGCTAGCTATGGAGTTAGCAAGACATGAGGAGCTGTACTACGCAACAATGATGGACCAAGAGAACAGCATTGGCAGTAAAATGGAAGGTGAAGAAGGAGGTGGTGGTGGTGGTGAAGCCAGTGGCTCCAAAAATACCACTAAAAAGAAATCCCCACATCTTGGAATAACAATGTTGGCTTCAAAGTTTGCAGCAAATACAAGAAGAGGGCTTCACCAGAAGTCGTTGGCATTCGTCTCAGATGTCAGCAGCTTGAAAATGCCTAAGCTGTTTAAGCCTGAGGAACCAGATTTCTCTGCTTTCCGAGATGGGAGTTGA 2091 46.25 MHNIAYSRLGDLQKSFSLYRKVPWWDHILEPDSDFVFRWHRIFLVTCLIALFVDPLYFYLPFIGAPGCMQFNLGLGIVVTFFRTIVDLFSMFHMLMKFRTAFVAPNSRVFGRGDLVKDPTAIAMRYLKKDFVIDLAATLPLPQIVIWFVLPALKNPTATHANHTLALIVLIQYAPRLFVIFPLNRRINKTTGSIAKTAWAGAAYNLLLYLLASHIIGAAWYVASIQRQDECWKIECRKEMNTTHSPSCKPFFLDCDSLNEPERKAWLRITHVLTKCDALNDDKNFQFGMFADAFTAEVASTNFIEKYFYCLWFGLKSLSSYGQNLATSTSSGEILFSILICSMGLVLFSHLIGQVQGYLQSTSARLEEWRVKRRDTEEWMRHRQLPIHLQDRVRRFVQYKWIATRGVDEESILRSLPLDLRRQIQRHLSLALVRRVPFFAQMDAQLLDAICERLVQSLNTKDTFITREGDPVNEMLFIIRGQLESSTTNGGRSGFFNSITLRAGDFCGEELLTWALVPSPSISLPSSTRTVKSLTEVEAFALRAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGSCFIQAAWRRYVKRKLAMELARHEELYYATMMDQENSIGSKMEGEEGGGGGGEASGSKNTTKKKSPHLGITMLASKFAANTRRGLHQKSLAFVSDVSSLKMPKLFKPEEPDFSAFRDGS 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 600493 604390 - CmaCh10G001320.1 Cma10g00132 301448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00132 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 692 - -
Cma10g00132 696 Gene3D - 41 359 - -
Cma10g00132 696 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 1 692 - -
Cma10g00132 696 SUPERFAMILY cAMP-binding domain-like 367 563 IPR018490 -
Cma10g00132 696 MobiDBLite consensus disorder prediction 616 642 - -
Cma10g00132 696 SMART cnmp_10 438 569 IPR000595 -
Cma10g00132 696 Pfam Cyclic nucleotide-binding domain 461 549 IPR000595 -
Cma10g00132 696 CDD CAP_ED 438 569 IPR000595 -
Cma10g00132 696 Gene3D Jelly Rolls 436 556 IPR014710 -
Cma10g00132 696 Pfam Ion transport protein 39 365 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cma10g00132 696 ProSiteProfiles cAMP/cGMP binding motif profile. 438 568 IPR000595 -
Cma10g00132 696 Gene3D Helix hairpin bin 360 428 - -
Cma10g00132 696 SUPERFAMILY Voltage-gated potassium channels 31 360 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00132 Cma-Chr10:600493 Cma11g00421 Cma-Chr11:2074262 0 dispersed
Cma10g00132 Cma-Chr10:600493 Cma14g00640 Cma-Chr14:3173518 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00132 K05391 - csv:101209760 1184.47