Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00135 ATGCTGTCAAGTTCTTGCTTGAGTTTCTTAGAGCTATCGTCTTCGGATATGTTGGATTTTCCTCCTACACCAAGAACCGTTCCACGGGTGTTGACTGCTTCCGGGATATTTTCCGATAAGGATTCGGAAATTTCCTCGTCGAAAGGCCAAGGGAGAAAAATTATAGTGGCAAATTTTCTTCCTCTTCATGCTAAGAAGGATACAGATTCCGGGCAATGGAACTTCAGTTTTGACGAGGATTCGCTTCTGCTTCAGCTGAAGGATGGATTCTCACCTGATGTAGATGTTATATATGTCGGATCTTTGAAGGTCGATGTTGATGTCCGGGAGCAAGACGAGATTTCTCAGAAACTGCTGGAGGAATTTAACTGCGCACCGACTTTCATTCCTACGCACCTTCAGAAACAGTTCTATCATGGATTCTGTAAGCAACATTTGTGGCCACTTTTTCATTACATGATGCCGATTTCCCCTTACCATGGATCCCGCTTTGATCGACGTCTTTGGCAAGCGTATCTTTCGGCTAACAAAAGGTTTGCCGATAAAGTTATGGAGGTAATCAATCTAGAAAAAGATTATGTCTGGATTCATGACTACCACCTTATGGTTCTCCCTACTTTTTTGAGAAAACGCTACAGTCGAATCAAGCTCGGATTCTTCCTTCATAGTCCGTTTCCTTCATCGGAAATATACCGAACTCTGCCTGTTAGAGATGAGATTCTGAGAGCATTACTTAATGCAGACCTAATAGGTTTCCATACATTTGATTACGCTCGCCACTTCCTATCTTGTTGTAGTAGACTGCTTGGATTGGAGTATGAATCTAAACGAGGGTATCTCACGCTCGAGTATTTTGGCCGTACAATATACATCAAGATTTTGCCTGTTGGGGTTCATATGGGTCGACTTGAATTTGCATTAGACCAACCACACACTTCAATCAAGGTCAAGGAAATCAAAGAAAATCTCCAAGGAAAGAAACTTATTCTTGGTGTTGATGACATAGACATATTTAAAGGTATAGGTCTGAAATTACTAGCTATGGAACAGCTCTTGAGCCAGCATCCAGAGTTACGGGGCAATGTCGTTCTGGTGCAAATTCTAAATCCAGCACGGAGCAATGGGAATGATGTACAAGAAGCAAAAAGGGAAACTTATGAGATAACCGAAAGGATTAACAAGGTTTTTGGTTGTCCGGGTTATCAACCTGTAATCTTGATTGATCATCCTATTCCTCCTCACGAGAAGATTGCATATTACGTATCAGCAGAGTGCTGCATTGTAAATGCTCTCAGGGATGGTATGAACTTAGTTCCATATGAGTACATTGTTTGTCGACAGGGAACTTCAAAAATGGATAAAGTCTTGGAAGTCTCCCCGAGTTCACCTCGTACCAGCACGATTGTCGTGTCGGAATTTATAGGTTGTTCACCGTCCCTAAGTGGTGCGGTCAGGGTAAACCCCTGGGATTTTGACGCTGTAGCTGATGCACTTTATGCAGCTGTCACCATGCCTGCTTTAGAGAAGCAACTGAGGCACGAAAAGCATTACAGATATGTTAGCTCTCACGATGTTGCTTACTGGGCTCGCAGTTTCTTGCATGATTTGGAGCGAGCATGCCAAGAACACTACAGCAAACGTTGCTGGGGCATTGGTTTAGGTTTAAGTTTCAGAATTTTGTCACTCTCTCCAAGTTTCAGGAAGCTTTCCATTGAACATATTGGCTCTGCATATCGAAACGCTTCTAGGAGAGCGATATTTTTGGATTATGATGGGACTGTGGTTTCCGAAACTTTAGTGGTCAAATCCCCATCACCTGAAGTCATTTCTATCATCAACAACCTTTGCACGGATCCAAAGAACACCGTGTTTATTGTTAGTGGCAGGGGGAAAGTTTCCCTCGGTTCATGGTTCGATTCGTGCAAGAATCTAGGTATTGCCGCTGAACACGGGTACTACTTGAGGTGGAATAGGGATTCTGACTGGGAAGTTAGTCCATTAGCTGAAAACTTTGACTGGAAAAGGATTGCAGAACCTGTGATGAACCTATACACTGAGGCAACCGATGGTTCATACATAGAGACCAAGGATAGTGCCTTGGTATGGCACTATCAAGACGCGGATCCTTATTTTGGTTCGTGTCAGGCCATGGAGCTCTTGGACCACCTTGAAAACGTCCTTGCTAACGAACCCGTAGTTGTCAAAAGAGGCCAGCAGATCGTCGAAGTAAAACCACAGGGTGTGACTAAAGGATTAGTAGCTGAAAGAGTTCTTTCCACAATGGTTAATTCTGATAAAGCACCCGACTTTGTGATGTGCATTGGGGACGATCGATCCGATGAAGATATGTTTGAGAGCATATTGAGTAGAAGCTATAGCTTATCCCTTGCTACGCCCCCGATGATATTTGCCTGTACTGTGGGACAAAAGCCTAGCAAAGCCAAATACTATTTAGACGATACCGCAGATGTTTTGACCTTGCTTCAAAGCCTGGCCAACTGTTCTAGTAGCCGTAAACTGAGATCGAGTTTTGAAACTCCTGTTTTGTTCGAGGATGATGTTTGA 2565 43.39 MLSSSCLSFLELSSSDMLDFPPTPRTVPRVLTASGIFSDKDSEISSSKGQGRKIIVANFLPLHAKKDTDSGQWNFSFDEDSLLLQLKDGFSPDVDVIYVGSLKVDVDVREQDEISQKLLEEFNCAPTFIPTHLQKQFYHGFCKQHLWPLFHYMMPISPYHGSRFDRRLWQAYLSANKRFADKVMEVINLEKDYVWIHDYHLMVLPTFLRKRYSRIKLGFFLHSPFPSSEIYRTLPVRDEILRALLNADLIGFHTFDYARHFLSCCSRLLGLEYESKRGYLTLEYFGRTIYIKILPVGVHMGRLEFALDQPHTSIKVKEIKENLQGKKLILGVDDIDIFKGIGLKLLAMEQLLSQHPELRGNVVLVQILNPARSNGNDVQEAKRETYEITERINKVFGCPGYQPVILIDHPIPPHEKIAYYVSAECCIVNALRDGMNLVPYEYIVCRQGTSKMDKVLEVSPSSPRTSTIVVSEFIGCSPSLSGAVRVNPWDFDAVADALYAAVTMPALEKQLRHEKHYRYVSSHDVAYWARSFLHDLERACQEHYSKRCWGIGLGLSFRILSLSPSFRKLSIEHIGSAYRNASRRAIFLDYDGTVVSETLVVKSPSPEVISIINNLCTDPKNTVFIVSGRGKVSLGSWFDSCKNLGIAAEHGYYLRWNRDSDWEVSPLAENFDWKRIAEPVMNLYTEATDGSYIETKDSALVWHYQDADPYFGSCQAMELLDHLENVLANEPVVVKRGQQIVEVKPQGVTKGLVAERVLSTMVNSDKAPDFVMCIGDDRSDEDMFESILSRSYSLSLATPPMIFACTVGQKPSKAKYYLDDTADVLTLLQSLANCSSSRKLRSSFETPVLFEDDV 854
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 613343 616102 + CmaCh10G001350.1 Cma10g00135 301451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00135 854 CDD GT20_TPS 52 537 IPR001830 GO:0003824|GO:0005992
Cma10g00135 854 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 842 IPR001830 GO:0003824|GO:0005992
Cma10g00135 854 TIGRFAM T6PP: trehalose-phosphatase 581 832 IPR003337 GO:0003824|GO:0005992
Cma10g00135 854 CDD HAD_TPP 585 824 - -
Cma10g00135 854 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 52 541 - -
Cma10g00135 854 Gene3D - 713 845 IPR023214 -
Cma10g00135 854 Gene3D - 583 698 IPR023214 -
Cma10g00135 854 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 585 785 IPR006379 -
Cma10g00135 854 Gene3D Glycogen Phosphorylase B; 44 304 - -
Cma10g00135 854 SUPERFAMILY HAD-like 584 832 IPR036412 -
Cma10g00135 854 Gene3D Glycogen Phosphorylase B; 305 521 - -
Cma10g00135 854 Pfam Glycosyltransferase family 20 52 537 IPR001830 GO:0003824|GO:0005992
Cma10g00135 854 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE (UDP-FORMING)-RELATED 1 842 - -
Cma10g00135 854 Pfam Trehalose-phosphatase 587 821 IPR003337 GO:0003824|GO:0005992
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00135 Cma11g00105 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g01714 Cma-Chr4:8627964 Cma10g00135 Cma-Chr10:613343 0 dispersed
Cma10g00135 Cma-Chr10:613343 Cma19g01006 Cma-Chr19:8674708 0 dispersed
Cma10g00135 Cma-Chr10:613343 Cma11g00105 Cma-Chr11:560642 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00135 K16055 - csv:101209676 1591.63