Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00138 ATGGCTCAGCCGGAGAGATCCACCTTAAGGGTCTCAAACGTTCCCGAATCCGCCGTAGCCGAAGACCTCTTGACCTTTCTCAAGTCCAAATTGGGTCCCGACTCCGTCTTCGCCATCGAAATCTTCACCGAGCGAAAGAACTGGAAATCGCGCGGCTCTGGTCGCGTACAGTTCACCACGCTCGGGGCCAAATCCAAAGCCCAGTCCCTCTCCGTTCAAAACAACCTCGTCTTCAACACCCACAACCTGAGATTCTCCGAGACCAACGATGACATTATTGTGAGGCCAATACACGCCAGAAACAGGACCGAGAACGGGGTTTTGCATGTGGGTTTTATGCTGAAAGAGGATCACATGAGTGTTTTGGAGTCTTGGGAAGGTGTAAAAGCTTGGATTATGCCGGAGAGGAGGAGGGTGGAGTTCTGGATATGGCGCGAAGATGAGTGCTATAAGCTTGAAGTGATGTTTGAGGAAATTCTCGAAACTACTGGATATTGTTTAGGAGATGAGAAATTGAACGCACTTCTCCTAAAGCTCAAATATGCGCCGAGAATATATAAAAAGATTTCTGGATCAAACATGGCTTCCAAATTCAGCAGCAGTCGCTACCGTCTATGCAAAGAAGAACATGATTATCTTTGGATTCGGACAACAGAGTTTTCTTCTCTGAGATCAATAGGTCAGTCCACTTCCTTTTGTTGGGAAGTTGAAGAAGATTTGCAGGCTTCAGATATCTTTTCTAGTTTCCCACTTTACAGGGAAACTCCAAAAGATATTACATTAGAGGATGGTGGAGAATTTGGCAGTACCTCAGAGGCTGTTCCTCTGATAAAATCTGGGTTAGTTTCTAATCTAGCTTATGAGGTTCAATATCAGCTCAATTCCTTAGTTCATATGCAGAAAATTAGCCTTGCTGCAGCCAACAATGATCTGATTGAATTCCTTAGCACTTTAGGTACTGACACTGCGTTGAATATACTTCAGAGGTTACATCAGCTGAAGCTCATTTGTTATGATCCTTTGTCGTTTCTAAAGACCCAATTACATGTTCTGAAAAGGAACTGCAAAGTTCTTCCTTCATTGTCTCAAAAGAGGTTGTCGAATAATGTGATGAACTGCTATAGAGTTCTTGTCACCCCATCAAGAATTTATTGTTTGGGACCTGAGCTTGAAACTTCTAATTATGTTGTGAAAAACTTTGCATCATATGCTTCTGATTTTATGAGGGTTACTTTTGTTGAAGAGGACTGGAGTAAGCTTCCTGCAGGTGCCGTTACCACGAGTATACAGCGAGGCTTACTCTCGAAACCTTATAGAACTGAAATCTATCATCGAATAGTGAGTATTCTTCGAAATGGAATTGTTATTGGAGCCAAAAGGTTTGAGTTCTTGGCCTTCTCAGCTAGTCAACTCCGATCGAACTCTGTTTGGATGTTTGCTTCAAGCGACAACTTGAAAGCAGAAGAAATTAGACAGTGGATGGGCTGCTTTGAAAAGATTCGTAGTATCTCCAAATGTGCAGCTAGGATGGGTCAATTGTTCAGTTCTTCCACTCAAACTCTTGTTGTTCCTACTCAAGATGTTGAGATTATACCCGATATCGAAGTGAATTCTGATGGTATTGACTACTGCTTCTCAGATGGTATCGGAAAAATTTCGCTTTCATTTGCAAGGCAAGTAGCTGATAAGTGTGGATTGACTCACATCCCTTCGGCATTTCAAATTCGATATGGTGGATACAAAGGTGTCATTGCTGTCGATCGTAATTCCTTTCGTAAACTATCTTTGCGTGATAGCATGCTTAAATTCAAATCGAAGAACAAGATGCTCAATGTTACCAAGTGCAGCGACTCCATGCCTTGCTATCTAAATCGAGAGATCGTTACTCTTTTGTCAACTTTGGGAGTGAAGGACGAAAGCTTCAAGGCACTGCAGCAAGAACAACTACATCTTCTAAGGAGAATGCTGACGGATAAAGTCGCTGCTTTGAACGTCTTGGAAAATCTGAACGGTGCTGATTCTAATAACATTCTGGTGCAGATGTTAAACCACGGGTACGAGCCTAATATTGAACCGTACCTCTCAATGATGCTTCAAGCACACTATTGGAACTTGTTTTCTGATTTAAGAAGTAGATGTAGAATATTTGTTCCAAAGGGCCGGATCCTCCTCGGGTGCTTGGATGAAACTGGTATTTTAGACTATGGCCAAGTTTATGCCTGCATAACCTTGTCAAAATCCGAGCTTCGGGACAGGAACCAGAACTACTTCCATAAGATAGACGAGACGAAATCGATATTGCTCGGGAAGGTAGTTGTTACAAAAAATCCATGTCTTCATCCAGGAGATGTAAGGGTTCTTGAAGCTATTTTCCATGTAGAACTAGAGGAGAAGGGATTGGTGGACTGTCTTATATTTCCTCAGAAAGGAGAAAGGCCACATACAAATGAATGTTCTGGTGGTGATCTTGATGGAGATTTATATTTCATAAGTTGGGATGAGAATCTGGTTCCGCCCAAAACCGAAGCACCTATGGACTATACGGGACGGAGGCCACGTATAATGGATCACGATGTGACACTAGAGGAAATTCAGAAGTTTTTTGTTGATTATATGATCAATGACACATTAGGTGCCATTTCGACTGCACATTTAGTTCATGCAGACCGTGAACCGAAGAAAGCCCTAAGCTCAAAATGTTTAGAGCTGGCTGCGCTGCACTCAATGGCAGTTGATTATGCAAAAACCGGAGCGCCAGCGGAGATGCCTCGAGTTTTAAAACCTAGGGAGTTTCCAGATTTTATGGAGAGATTTGATAAACCAATGTACAAATCCAATAATGTACTAGGAAAACTCTACAGGGCTGCGGTTAAGACGATGGAGCAAGAAAGGTCAAGACTTGTGTGGACAGAGGAGACTGCTACAGCAATTTATGATCATGATCTTGAAGTGGATGGCTTCGAAGCTTTCCTTGAAACAGCTGAAAGTTTCAAAGTCATGTACATTGAAAAAATGAGCATTTTGATGAACTACTATGGGGCAGAGTATGAAGATGAGATATTGATGGGCGATCTTCGAAGTCGAGCATCGTATCTGCAACGTGACAATCGCAAGTATGGCGATATGAAGGATAGGATCTTGCTTTCGGTTAAGTGCATACGCAAGGAGGCCAAAGAATGGTTCGAGAATAGCTGCGCCCCACATGAACACAAGATGATGGCCTCTGCATGGTATCATGTAACTTATCACCCTTCCTACTTCAAACGAGATATGTTCTACTTCAGCTTCCCATGGATTGTACATGATGTTTTACTCAACATAAAGGCAATGAACTCCAAAAGACGTGAAGCAGAAAAGAACTTGTAG 3366 42.48 MAQPERSTLRVSNVPESAVAEDLLTFLKSKLGPDSVFAIEIFTERKNWKSRGSGRVQFTTLGAKSKAQSLSVQNNLVFNTHNLRFSETNDDIIVRPIHARNRTENGVLHVGFMLKEDHMSVLESWEGVKAWIMPERRRVEFWIWREDECYKLEVMFEEILETTGYCLGDEKLNALLLKLKYAPRIYKKISGSNMASKFSSSRYRLCKEEHDYLWIRTTEFSSLRSIGQSTSFCWEVEEDLQASDIFSSFPLYRETPKDITLEDGGEFGSTSEAVPLIKSGLVSNLAYEVQYQLNSLVHMQKISLAAANNDLIEFLSTLGTDTALNILQRLHQLKLICYDPLSFLKTQLHVLKRNCKVLPSLSQKRLSNNVMNCYRVLVTPSRIYCLGPELETSNYVVKNFASYASDFMRVTFVEEDWSKLPAGAVTTSIQRGLLSKPYRTEIYHRIVSILRNGIVIGAKRFEFLAFSASQLRSNSVWMFASSDNLKAEEIRQWMGCFEKIRSISKCAARMGQLFSSSTQTLVVPTQDVEIIPDIEVNSDGIDYCFSDGIGKISLSFARQVADKCGLTHIPSAFQIRYGGYKGVIAVDRNSFRKLSLRDSMLKFKSKNKMLNVTKCSDSMPCYLNREIVTLLSTLGVKDESFKALQQEQLHLLRRMLTDKVAALNVLENLNGADSNNILVQMLNHGYEPNIEPYLSMMLQAHYWNLFSDLRSRCRIFVPKGRILLGCLDETGILDYGQVYACITLSKSELRDRNQNYFHKIDETKSILLGKVVVTKNPCLHPGDVRVLEAIFHVELEEKGLVDCLIFPQKGERPHTNECSGGDLDGDLYFISWDENLVPPKTEAPMDYTGRRPRIMDHDVTLEEIQKFFVDYMINDTLGAISTAHLVHADREPKKALSSKCLELAALHSMAVDYAKTGAPAEMPRVLKPREFPDFMERFDKPMYKSNNVLGKLYRAAVKTMEQERSRLVWTEETATAIYDHDLEVDGFEAFLETAESFKVMYIEKMSILMNYYGAEYEDEILMGDLRSRASYLQRDNRKYGDMKDRILLSVKCIRKEAKEWFENSCAPHEHKMMASAWYHVTYHPSYFKRDMFYFSFPWIVHDVLLNIKAMNSKRREAEKNL 1121
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 619940 623897 - CmaCh10G001380.1 Cma10g00138 301454

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00138 1121 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 4 1115 - -
Cma10g00138 1121 Coils Coil 1100 1121 - -
Cma10g00138 1121 Pfam RNA dependent RNA polymerase 378 955 IPR007855 GO:0003968
Cma10g00138 1121 PANTHER RNA-DEPENDENT RNA POLYMERASE 4 1115 IPR007855 GO:0003968
Cma10g00138 1121 SUPERFAMILY RNA-binding domain, RBD 5 121 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00138 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101209921 2040.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g02132 Cma-Chr4:14906857 Cma10g00138 Cma-Chr10:619940 0 dispersed
Cma05g00384 Cma-Chr5:1690664 Cma10g00138 Cma-Chr10:619940 5.97E-176 dispersed
Cma10g00138 Cma-Chr10:619940 Cma11g00643 Cma-Chr11:3113090 1.23E-25 dispersed
Cma10g00138 Cma-Chr10:619940 Cma15g00901 Cma-Chr15:4636912 0 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g714 . . Bda06g00585 . . . . Bma12g01030 . . Cma10g00138 . Car10g00129 . Sed08g0142 . . Bhi02g00421 Tan09g2226 Cmetu02g1382 . Hepe09g0188 . . Cla06g01649 Cam06g1834 Cec06g1883 Cco06g1889 Clacu06g1793 Cmu06g1735 Cre06g2553 . . Cone13ag0129 . . . . . . . . . Bpe07g00826 . . . . Cmo10g00144 . . . . . . Cpe18g00835 . . . . . . . . . . . . . . Lsi06g01537 Csa01g00166 Chy02g02565 Cme02g01954
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012365 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00138 Cma_Chr10 FPKM 8.213744 8.709982 9.26596 9.71797 10.686388 10.448688 11.037897 13.643128 12.816074 13.25363