Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00139 ATGGAGGTTATGGTTGACAGTGAAGCCTTGGACGGCCATGCCAAAACCTGGATAGGCGGAAGGAAAAGGCAAGCCCCCACTTTCAAACTCCCAGAAAATCGATGGGGCCATAACCCCACAAAGCAGAGGAACCTTGCCTTGCCACGTGGTGGCCTCCTTTTTCCAACATCTGCACCGTCTCGATTCCTCCTCCCCCAATTTCATTCTCTTCTCTATAAATCTTCCTTTTCCCCCCTTCTTCATTTCCGGTCGGTTCACGGGACTCTCCGTTACCCACTTCAATTCAGGCATCGTCCTGTGAAACAGGCTTCCTTCTCTGCTTCTTCTAAGTGTACTCCAGTAGTAACTTCTAATGTTCAAGCATATGTGTTTGTGGCAGATTTTGGAAGTGCAGCTCGCTCATTCACGATGTCGTCTCCAAGCAAAAGGAGAGAAATGGATGTCATGAAATTGATGATGAGTGACTACAATGTGGAGATGATAAATGATGGACTAAATGAATTCAATGTGGACTTCCATGGTCCCAAACAAAGCTTATACGAAACTGGCGTTTGGAAAATTCGTGTCGAGCTTCCTGATGCATATCCATATAAGTCTCCTTCGATCGGTTTCGTGAACAAGATATTCCACCCAAATGTTGATGAACTATCTGGTTCTGTGTGCTTGGATGTGATTAACCAGTCTTGGAGTCCGATGTTCGATCTTTTAAACGTTTTTGAGGTTTTCCTTCCTCAGCTTCTCCTTTATCCGAATCCTTCGGACCCGCTTAACGGCGACGCAGCATCGCTTATGATGAAGGATCGGAAACAGTATGATGAGAAAGTTAAAGAGTACTGCGAACGATTCGCGAAGAAGGAGAATGACATTAAATGCACATCAGAAGACGAGAGTGAAGAGGATGAAATGAGCGATAACGAAAGTGGTTCAAGCGACGACGACGTTGCTGGACATGCCGATCCCTAA 963 45.69 MEVMVDSEALDGHAKTWIGGRKRQAPTFKLPENRWGHNPTKQRNLALPRGGLLFPTSAPSRFLLPQFHSLLYKSSFSPLLHFRSVHGTLRYPLQFRHRPVKQASFSASSKCTPVVTSNVQAYVFVADFGSAARSFTMSSPSKRREMDVMKLMMSDYNVEMINDGLNEFNVDFHGPKQSLYETGVWKIRVELPDAYPYKSPSIGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNPSDPLNGDAASLMMKDRKQYDEKVKEYCERFAKKENDIKCTSEDESEEDEMSDNESGSSDDDVAGHADP 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 624176 627338 - CmaCh10G001390.1 Cma10g00139 301455

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00139 320 Coils Coil 268 288 - -
Cma10g00139 320 CDD UBCc 143 279 IPR000608 -
Cma10g00139 320 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 139 320 - -
Cma10g00139 320 Pfam Ubiquitin-conjugating enzyme 147 278 IPR000608 -
Cma10g00139 320 SMART ubc_7 140 284 - -
Cma10g00139 320 MobiDBLite consensus disorder prediction 293 308 - -
Cma10g00139 320 MobiDBLite consensus disorder prediction 289 320 - -
Cma10g00139 320 Gene3D Ubiquitin Conjugating Enzyme 130 298 IPR016135 -
Cma10g00139 320 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 139 320 - -
Cma10g00139 320 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 209 225 IPR023313 -
Cma10g00139 320 SUPERFAMILY UBC-like 140 285 IPR016135 -
Cma10g00139 320 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 136 284 IPR000608 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00139 K10576 UBE2H, UBC8; ubiquitin-conjugating enzyme E2 H [EC:2.3.2.23] - csv:101210421 343.199
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00139 Cma18g00152 CCT
Cma10g00139 Cma11g00106 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01439 Cma-Chr2:8282912 Cma10g00139 Cma-Chr10:624176 3.06E-96 dispersed
Cma10g00139 Cma-Chr10:624176 Cma15g01238 Cma-Chr15:7847045 4.05E-95 dispersed
Cma10g00139 Cma-Chr10:624176 Cma11g00106 Cma-Chr11:567722 1.46E-111 wgd
Cma10g00139 Cma-Chr10:624176 Cma18g00152 Cma-Chr18:784204 4.04E-98 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g712 . . Bda06g00584 . Bpe12g00586 . . Bma12g01029 . Cmo18g00121 Cma10g00139 Cma11g00106 Car10g00130 Car11g00105 Sed08g0143 . Cpe04g01545 Bhi02g00419 Tan09g2224 Cmetu02g2070 . Hepe09g0187 . . Cla06g01648 Cam06g1833 Cec06g1882 Cco06g1888 Clacu06g1792 Cmu06g1734 Cre06g2552 Cone2ag0890 Cone16ag0119 . . Lsi02g00356 Csa01g00832 Chy12g01286 Cme12g01711 Blo13g00049 . . . Bpe07g00825 . . Bma08g00102 Sed01g1676 Cmo10g00145 Cmo11g00108 . Cma18g00152 . Car18g00147 Cpe09g01039 . Bhi08g01582 Tan05g2031 Cmetu12g1608 Lac10g0427 . . . Cla01g01389 Cam01g1449 Cec01g1485 . Clacu01g1472 Cmu01g1367 Cre01g1284 Lsi06g01536 Csa01g00167 Chy02g02564 Cme02g01953
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000389 3 10 1 5 4 3 5 3 3 3 3 3 5 4 4 4 3 4 5 3 4 3 3 4 4 3 4 10 11 3 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00139 Cma_Chr10 FPKM 4.51941 5.042668 20.610956 21.948282 5.62246 5.87347 5.178687 19.159758 20.43622 19.664211