Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00141 ATGTTTTTGACTCGAGTGATTGGGAGAAGATTTCTGGCTGCTGCTAGATCAGAAACTTCTTCTGCAGCTGCTGCTGCTTCTACAGCTACGACGGGCTATAACCCGCTCGAGGAGTTTTTTGAGGCAGATAGAAGTCCAGATGATGACAAACCTGTTGTGTATGGTCGAAGTTGGAAGGCTTCGGAACTACGGCTCAAGTCTTGGGATGATCTTAATAAGCTATGGTATGTTCTGTTGAAGGAGAAAAATATGTTGATGACACAGCGCCAGATGCTTAATGCACAAAATCTAAGGTTTCCTAATCCAGAACGTATTCCCAAGGTGCGGAAGTCAATGTGCCGAATCAAGCAAGTACTTACCGAGAGAGCCATCGACGAACCAGATCCTCGGAGATCTGCAGAGATGAAGAGGATGACGGGGGTGGCCAAGGTTCACCGGCTGGGTAACCCAATCATCCCCGGAGGAGAAAATTCCCGAAACGGAAAGTGGGAAGTGGGACCCAGAGATGACGAAAACAGGGCCGCGAAGGGCATTGGATTGAATGTCAGAGCCCCCAAAAACGCAGTTGTGTGGGATCGAAACTGGAATTGGGGAAAATGCAAGGCTATGCATGGGCGTCGAGGTGAGGACTGGAAACGGACTCGGCACATGTGGACAGTCCACACACTTGGTACCCAGATCGTAGAAGCAGATGGTTCTTCATCATCGTCTTCGTCTGCACTTAATTCGTTTTGCAAGGGTGGACGTAGAATTAGTGTTGGTGATTGTGCTCTTTTCAAACCCCCTCAAGATTCCCCACCTTTTATTGGCATAATCCGGTGGTTAACGGCTGGTAAGGAGAATAAGTTAAAGTTAGGTGTGAATTGGCTTTATCGATCTTCTGAACTAAAGCTCGGCAAAGGCATCCTTTTGGAAGCTGCGCCGAACGAAGTCTTCTATTCCTTTCATAAGGATGAAATTCCTGCTGCATCTTTACTCCATCCGTGTAAAGTTGCATTTCTTCCAAAGGACGTTAAACTTTCATCAGGGATCTCGTCATTTGTGTGCCGGAGAGTGTATGACATAACAAATAAGTGTTTATGGTGGCTTACCGATCAGGATTATATTAATGAACGTCAGGAAGAAGTAGATCAATTGCTATATAAGACAAGATTAGAAATGCATGCTTCAGTGCAATCCGGTGGCCGATCACCTAAGCCTACAAGTGGTCCAACATCAACATCTCAGTTAAAAGCTAATTCAGATAGTGTTCAAACCACTGCCTTTCCTTCTCACACAAAAGGCAAGAAAAGAGAAAGAAGTGACCAGGGATTAGAATCTGTTAAACGTGAGCGCATCATCAAAGCTGATGAAGGGGATTCTGCTAACTGCAGATTGGAAAATACGTTAAAGTCTGAGATTGCAAGAATTGCTGAAAAAGGAGGCTTAGTTGATTCTGAAGCTGTCGAGAAATTGGTGCAGCTTTTGCTGACCGATAGAAATGACAAAAAAATTGATTGGGCTTGCAGATCAACACTTGCAGGTGTGATAGCTGCCACAGATAAGGTCGAGTGCCTTAGTCAATTTGTGCATCTTAAGGGTTTACTTGTACTTGATGAATGGCTCCAAGAGGTTCACAGGGGGAAAATTGGCAGTGGTGGTAGCCCCAAGGATAGCGATAAAGCAGTTGAGGAATTTCTCCTGGTTTTGCTTCGAGCCCTTGATAAACTACCTGTAAATCTTCCTGCTTTACAGATGTGCAATATTGGAAAGTCTGTGAATCATTTACGCTCACATAAGAATTTAGAAATTCAGAAGAAAGCAAGGAGCTTAGTGGACACATGGAAAAAACGCGTTGAAGCGGAAATGAATATTAATGATGCAAAGTCTGGTTCAAACCAAGCTGTTGCATGGAGTGCAAGGACTCGTCCATCTGAAGTTTCTCATGGAGGGAGGAATCAAGATGCATCCTCTGAAGTTGCCATGAAGAGCTCGGTTTCTCAGCTCACTACATCCAAGTCTGTTTCAGTTAAGCTAGCTCAGGATGAGAGTATTACAAGATCTGCATCTGCCTCTCCTGGTTCGATGAAACCAGTTTTATCACCTGCATCAGCAAGCATTAACTCGAAAGATGGATCTTCCAGAAATCCTGGTGTTTGTGGCACTACTGATCTTGCTCAAACTATTGCCAAGGATGAAAAGAGTAGCAGTTCTAGCCAGTCCCACAATAATAGTCAATCTTGTTCTAGTGAACACGGTAAAAGTGGTGGCTTAGGGAAGGAGGATGCAAGAAGCTCTACTGCTGGTTCAATGAGCGTGAACAAGATCTCAGGTGGTGGATCTCGCCAGCGCAAGTCAGTTAATGGATTTCCTGGTTCTGTTCTCTCGGGGGCTCAACGAGATGTAGGATCGGGGAAAAGTTCTTTGCATAGAAACACAGTCTTAGAGAGATCATCACAATCTGGAATGACCTTTGAAAAGGCATGTGATGGACCTATTGTTGAGGGAAACAGTCCTAAATTGATAGTGAAGATCACCAATCGTGGCCGGAGTCCTGCCCAGAGTGCTAGTGGAGGATCTTCTGAAGATCCTTCGATAATGAATACCAGGGCTTCTTCTCCTCCACTTTCAGAGAAGCTTGATCAATTTGATCACAGTAAGAGTGATACATGTCAACCTAATATTACTGGAGATGTGAATGCTGAGCCCTGGCAGAATAGTGATGTAAAGGATATGGTGACTGGGGCTGATGATGTTGATGGATCTCCTGCTGCTGTAAATGGTGAAGAGCGATGTAGGACTGCTGAGGATGTTAAAGTTTCAAAGGCAAATTCGTCATCATTAGCAAATGATCAAAAGAATGGGAAGTTACATGAGGCTTCTTTTAGCTCTATGAATGCTTTAATTGAGAGTTGTATTAAATGCTCTGAAGCGAGTATGCCTACCTCTCTCACAGATAATGTTGGAATGAATTTACTTGCTAGTGTGGCAGCTGTTGAGATGTCAAAGTCTGATTTTGTTCTGCCTTCCGATACTCAAGGAAATATCACTACAGTTGACCGAAGAGGCAGTGATTGTAAAGTCAAAGCATCTTGTCCTGAAGAGGATGCTAGAGATAACATGCAGTTAAATGATGCTATGGTTGTTAATGAGCAGGGCGTGATCATTGGTTCCTTTGGAGCTAATGGGGATGGAAGCTCTGCTTCAAATTCTGAAGAGAAACCTATTGGAGATCTAAATGGTCATTCAAAATCTTCTGGTGTAAATTTGCAACTAACGGCTGTGCCACAGGCAGACGGATGTATAAAAATGGACGAGTCTGGAGGTCCTGCCTCTCCTGCTAGGATACCAGAGAAGGGCTCTGAGATTGATGGGGCTAATCCAGTCAAGGACAGAAAGACATCTGATGTAGTAGATGAGGATAGCAGTCCAGAATCAAGACCAAAGCCAAGCAGTTCTTTTCCTGATGGTGGCATGGTCGTTGATGGTATCTCGAATCGGGAAGTTGAAATGAATGTTGTTGACAAGCCTTTGCATCGGTTCCAAGAAGCTGATGACAATAAAGATAATAGAATGAATGGTGTTAGTACAGCAGACCAAAGGCCATCATCAAAGTCGAACAGTGATTCTGCTAAATTGAAGAATGATGAATTATTTCAGGCTTCAGGCTCTTCAAGTGATCTGGTTTCTATAAATGCAAGTGGGATGAAGGGCGAGAAGGATGATGAAACCAATGAATCAGCTGATGTCAAACAACTTGAAAAACATCAAAGTGATCGAGACTCTATGCCTTCTGAGTCCCGAGATTTAGGTGGTTTGTGTTCAGCTATCAACCATGAGGACGAGCATGCAGAGGAGAATTTGGAATGTAACAAGGATAATGAGAAAAGTGGAGTACAAACACATCATGGACAATCTATTATGTCTCCTGTTCAAGAAACTGAACAGCATCTGTCATCCAAGAGATCCAAATTAGCTAGTGTAGAAGCAGAAGAGGCAGAGGAGTCTACATCTACTGATGCAGATCCTGGTTCCATGACTGCTGCGGGGGTATCAGATATGGATGCTAAGTTGGAATTTGATTTGAATGAAGGCTTTAATGTGGATGATGGAAAATGCAGTGAGCCAAGTAGCTTTACAACGTCTGGTTGTTTGACAACTGTTCAGTTAATTAGTCCGTTGCCCCTTCCTGTATCTAATGTGGTAAGCAACATTCCTGCTTCAATTACAGTTGCAGCTGCAGCAAAAAGACCTTTCGTTCCACCTGATGATCTATTGAGGAGCAAAGGGGAACTTGGTTGGAAAGGATCAGCTGCCACAAGTGCTTTTCGACCTGCTGAACCTAGAAAAGTTCTAGAAATGCCACTAGGTGTTGCAACCACTCCACTTGCTGATGCTGTGGCTAATAAAATTTCTCGACCTCCGTTGGATATTGATTTGAATGTGCCTGATGAAAGGATTCTTGAGGATATGAATGTCCAGATGTCTACTCAGGATGTGGCCTCTAAGTCTGACCTGGCTAATAATCGTGATCTGACACATGGTATTGGTGTCTCACATGCACGTTGCTCTGGAGGACTAGATCTTGACTTGAACCGAATTGATGATGCTCCCGATCCAAGCAACTTCTCCTTGAACAACTGTCGTAGAATAGATGCTCCTCTTAATGTTAAATCATCTACTGTTCCTCTCAATGACAAGGTGAATTTTCGTAGGGACTTTGATTTAAATGGACCTATTGTTGATGAGACCCCTACTGAACCATCAATATTTCCTCAGCATGCTAGAGGCAGTATGCCATCCCAGCCTTCTGTCTCAGGTCTTTGGATGAACAGTGCAGAAATGGGAAATTTTCCATCATGGTTTCCTCCAGGGAATGCTTATTCAGCTGTTGCAATTCCATCGATTTTGCCTGATAGAGCAGAACAGCCTTTTCCAGTTGTTGCAACAAATGGACCACCCAGGATTTTGGGACCCACAAGTGGTAGCAGTCCATATAACCCTGATGTCTTTAGAGGGCCAGTATTATCATCTTCTCCGGCTGTGCCATTTCCTTCTGCAGCTTTTCAGTATCCTGTCCTGTCTTTTGGAAACGGCTTTCCTCTACCGTCAGCCACGTTTTCAGGTAATGCAACAGCATATGGTGATTCATCATCTGGTAGCAGGCTTTGCTTCCCTGCAGTCCCCTCACAGTTCCTAGGTCCTCCTGGTACAGTATCAACCCCTTATCCAAGACCTTATGTTGTTAGTCACTCAGATGGCGGCCACAATACTAGTTCTGATGGTAGTAGAAAGTGGGGAAGACAAGGTTTAGATCTAAATGCTGGACCTGTAGTTGCAAACATTGAAGGAAGAGAGGAATCATCATCCTTTGTACCCAGGCAACTATCTGTTGCCAGTTCGCAGGCCACTACCGAGGAGCATATGCGGGTTTACCAGCCAACAATTGGCATAATGAAGAGAAAGGAACCAGAGGGAGGATGGGATGGGTACAAACAGTCGTCATGGTAG 5490 44.13 MFLTRVIGRRFLAAARSETSSAAAAASTATTGYNPLEEFFEADRSPDDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQRQMLNAQNLRFPNPERIPKVRKSMCRIKQVLTERAIDEPDPRRSAEMKRMTGVAKVHRLGNPIIPGGENSRNGKWEVGPRDDENRAAKGIGLNVRAPKNAVVWDRNWNWGKCKAMHGRRGEDWKRTRHMWTVHTLGTQIVEADGSSSSSSSALNSFCKGGRRISVGDCALFKPPQDSPPFIGIIRWLTAGKENKLKLGVNWLYRSSELKLGKGILLEAAPNEVFYSFHKDEIPAASLLHPCKVAFLPKDVKLSSGISSFVCRRVYDITNKCLWWLTDQDYINERQEEVDQLLYKTRLEMHASVQSGGRSPKPTSGPTSTSQLKANSDSVQTTAFPSHTKGKKRERSDQGLESVKRERIIKADEGDSANCRLENTLKSEIARIAEKGGLVDSEAVEKLVQLLLTDRNDKKIDWACRSTLAGVIAATDKVECLSQFVHLKGLLVLDEWLQEVHRGKIGSGGSPKDSDKAVEEFLLVLLRALDKLPVNLPALQMCNIGKSVNHLRSHKNLEIQKKARSLVDTWKKRVEAEMNINDAKSGSNQAVAWSARTRPSEVSHGGRNQDASSEVAMKSSVSQLTTSKSVSVKLAQDESITRSASASPGSMKPVLSPASASINSKDGSSRNPGVCGTTDLAQTIAKDEKSSSSSQSHNNSQSCSSEHGKSGGLGKEDARSSTAGSMSVNKISGGGSRQRKSVNGFPGSVLSGAQRDVGSGKSSLHRNTVLERSSQSGMTFEKACDGPIVEGNSPKLIVKITNRGRSPAQSASGGSSEDPSIMNTRASSPPLSEKLDQFDHSKSDTCQPNITGDVNAEPWQNSDVKDMVTGADDVDGSPAAVNGEERCRTAEDVKVSKANSSSLANDQKNGKLHEASFSSMNALIESCIKCSEASMPTSLTDNVGMNLLASVAAVEMSKSDFVLPSDTQGNITTVDRRGSDCKVKASCPEEDARDNMQLNDAMVVNEQGVIIGSFGANGDGSSASNSEEKPIGDLNGHSKSSGVNLQLTAVPQADGCIKMDESGGPASPARIPEKGSEIDGANPVKDRKTSDVVDEDSSPESRPKPSSSFPDGGMVVDGISNREVEMNVVDKPLHRFQEADDNKDNRMNGVSTADQRPSSKSNSDSAKLKNDELFQASGSSSDLVSINASGMKGEKDDETNESADVKQLEKHQSDRDSMPSESRDLGGLCSAINHEDEHAEENLECNKDNEKSGVQTHHGQSIMSPVQETEQHLSSKRSKLASVEAEEAEESTSTDADPGSMTAAGVSDMDAKLEFDLNEGFNVDDGKCSEPSSFTTSGCLTTVQLISPLPLPVSNVVSNIPASITVAAAAKRPFVPPDDLLRSKGELGWKGSAATSAFRPAEPRKVLEMPLGVATTPLADAVANKISRPPLDIDLNVPDERILEDMNVQMSTQDVASKSDLANNRDLTHGIGVSHARCSGGLDLDLNRIDDAPDPSNFSLNNCRRIDAPLNVKSSTVPLNDKVNFRRDFDLNGPIVDETPTEPSIFPQHARGSMPSQPSVSGLWMNSAEMGNFPSWFPPGNAYSAVAIPSILPDRAEQPFPVVATNGPPRILGPTSGSSPYNPDVFRGPVLSSSPAVPFPSAAFQYPVLSFGNGFPLPSATFSGNATAYGDSSSGSRLCFPAVPSQFLGPPGTVSTPYPRPYVVSHSDGGHNTSSDGSRKWGRQGLDLNAGPVVANIEGREESSSFVPRQLSVASSQATTEEHMRVYQPTIGIMKRKEPEGGWDGYKQSSW 1829
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 631032 641851 - CmaCh10G001410.1 Cma10g00141 301457

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00141 1829 MobiDBLite consensus disorder prediction 1229 1259 - -
Cma10g00141 1829 Coils Coil 1304 1324 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 880 896 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 1165 1185 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 147 170 - -
Cma10g00141 1829 ProSiteProfiles BAH domain profile. 249 364 IPR001025 GO:0003682
Cma10g00141 1829 MobiDBLite consensus disorder prediction 1053 1078 - -
Cma10g00141 1829 CDD Ribosomal_L29_HIP 61 122 - -
Cma10g00141 1829 ProSiteProfiles TFIIS N-terminal domain profile. 529 615 IPR017923 -
Cma10g00141 1829 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 517 626 IPR035441 -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 932 946 - -
Cma10g00141 1829 Gene3D - 31 130 IPR038340 -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 758 786 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 618 826 - -
Cma10g00141 1829 SMART TFS2_5 535 614 IPR003617 GO:0005634
Cma10g00141 1829 MobiDBLite consensus disorder prediction 913 946 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 841 869 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 389 443 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 394 424 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 1268 1292 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 1117 1139 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 1055 1078 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 619 746 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 425 443 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 1094 1342 - -
Cma10g00141 1829 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 203 1829 - -
Cma10g00141 1829 SUPERFAMILY Ribosomal protein L29 (L29p) 58 125 IPR036049 GO:0003735|GO:0005840|GO:0006412
Cma10g00141 1829 MobiDBLite consensus disorder prediction 1572 1591 - -
Cma10g00141 1829 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 479 616 IPR035441 -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 1186 1225 - -
Cma10g00141 1829 Pfam Mitochondrial 39-S ribosomal protein L47 (MRP-L47) 36 122 IPR010729 GO:0003735|GO:0005761|GO:0006412
Cma10g00141 1829 Pfam TFIIS helical bundle-like domain 563 612 IPR017923 -
Cma10g00141 1829 Gene3D - 233 463 IPR043151 -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 1293 1309 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 793 818 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 1310 1324 - -
Cma10g00141 1829 MobiDBLite consensus disorder prediction 841 896 - -
Cma10g00141 1829 Pfam BAH domain 251 358 IPR001025 GO:0003682
Cma10g00141 1829 CDD TFIIS_I 537 613 - -
Cma10g00141 1829 PANTHER BAH AND TFIIS DOMAIN-CONTAINING PROTEIN-RELATED 203 1829 - -
Cma10g00141 1829 SMART BAH_4 249 364 IPR001025 GO:0003682
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00141 - - - bhj:120071278 2815.41
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma10g00141 Cma11g00108 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01453 Cma-Chr2:8352704 Cma10g00141 Cma-Chr10:631032 1.39E-24 dispersed
Cma10g00141 Cma-Chr10:631032 Cma15g01226 Cma-Chr15:7772930 1.87E-24 dispersed
Cma10g00141 Cma-Chr10:631032 Cma11g00108 Cma-Chr11:577583 0 wgd
Cma10g00141 Cma-Chr10:631032 Cma11g01414 Cma-Chr11:9291935 0 wgd
Cma10g00141 Cma-Chr10:631032 Cma14g00633 Cma-Chr14:3137006 3.68E-91 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g703 . . . . . Bpe13g00257 Bma06g00204 . . . Cma10g00141 Cma11g00108 Car10g00133 Car11g00107 . . . Bhi02g00411 . . . Hepe09g0182 . . . . . . . . . . . . . . . . . . . . Bda14g00820 . . . . . . . . . . . . Cpe18g00832 . . . . . . . . . . . . . . Lsi06g01531 Csa01g00171 Chy02g02560 Cme02g01948
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003613 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 2 1 1 1 1 4 3 1 47
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35681 PF01426 BAH 2.10E-08 No_clan Cma TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00141 Cma_Chr10 FPKM 28.073439 30.445656 27.125294 26.618713 24.13093 24.067957 23.975004 30.621811 27.12867 28.383211