Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00151 ATGGCGATTTCTATTCCCAGTCGGCAGCTATTCATCGATGGCGAGTGGAGGGAACCAGTTCTCAAGAAACGCATCCCCATCGTCAACCCCGCCACTGAAGAAACAATCGGATCTATTCCCGCGGCTACTGCGGAAGATGTAGAGTTAGCAGTTGATGCTGCCCGAAAAGCTCTTGCGAGGAATAAAGGCAAAGATTGGGCATCTGCTTCGGGGGCTCTTCGTGCCAAGTATTTGCGTGCTATTGCTGCTAAGATAACAGAGAGGAAATCGGAACTAGCAAAGCTCGAAACAATAGACTGTGGAAAACCCCTGGAGGAAGCTGCATGGGACATTGATGATGTTGCTGGGTGCTTCGAGTACTATGCAGATCTTGCCGAAGGGTTGGATGCTAAGCAAAAAGCTCCTGTTTCCGTTCCCATGGATACATTCAAAAGCCATGTTCTTAAAGAACCCATTGGAGTTGTTGGGTTGATTACTCCCTGGAACTATCCTCTATTGATGGCTGCATGGAAAGTTGCACCTGCCTTGGCTGCTGGGTGTGCTGCAATATTGAAGCCATCAGAACTGGCATCTGTCACCTGTTTGGAACTGGGCGAAATCTGTAAAGATGTTGGTCTTCCATCTGGTATTTTGAATATTTTGACAGGATTTGGCCCTGAAGCTGGTGCTCCTCTAGCATCTCATCCTCACGTTGACAAGATTGCTTTTACTGGGAGTTGTGCTACTGGAAGCAAGATTATGACAGCAGCTGCCCAACTGGTCAAGCCTGTAACTATGGAACTTGGTGGGAAAAGTCCAATTGTTGTTTTTGATGATGTCGACCTTGACAAGGCTGCCGAATGGACGATTTTTGGTTGCTTTTGGACAAATGGTCAGATTTGCAGTGCCACATCCCGCCTGCTTGTACATGAAAGCATTGCTGATGAATTCTTGGATAGGCTCGTGAAGTGGTGCCAGAACATTAAGATCTCAGATCCTTTAGAAGAAGGTTGCAGGCTTGGCCCTGTTGTTAGTGCGGGACAGTATGAGAAAGTTCTGAACTTCGTCTCAACTGCTGAGCGCGAAGGTGCGAAGATTCTATTTGGTGGAGTTCGCCCTAAGCACCTAAAGAAGGGATACTTCGTTGAACCAGCCATCGTTACTAATGTTACAACCTCCATGCAACTATGGAGAGAAGAGGTCTTTGGACCTGTTCTATGTGTGAAGACCTTTAGTTCTGAAGATGAAGCTATTGAATTAGCAAATGATACAATATATGGGCTAGGTGCTGCTGTAATATCAAATGATTTAGAAAGGTGTGAGCGTGTAACCAAGGCTTTACAGGCAGGAATTGTGTGGGTTAATTGCTCGCAACCATGCTTCACTCAAGCCCCATGGGGAGGCAACAAACGCAGTGGCTTTGGTCGAGAACTAGGGGAATGGGGACTTGATAATTATCTGACTGTAAAGCAGGTTACTGAGTATGTTTCCGATGAACCATGGGGATGGCGAAGTTTTGTTGAGCAGTATGAAGAAGAAGACCCTGATGCGTCGGCGGCGGTATTGGGTTTTAGGGATCTGGGTTTACTTCGATTAGCGATGGGGAGCGCAGAGGAGAAGGTTGTTGCTGTGATCATGGTCGGCGGCCCCACTAAAGGAACTAGATTTCGACCACTGTCATTGAATATTCCGAAGCCTCTTTTTCCTTTGGCGGGACAGCCGATGGTGCATCACCCAATTTCTGCTTGTAAAAGGATTCCAAACCTGGCTCAGATTTTTCTTATTGGCTTCTATGAGGAGCGTGAATTTGCACTGTATTTATCTTCCATTTCTAATGAACTCAAAGTTCCTATTAGATATTTGAAGGAACAGAAGCCTCACGGTTCTGCCGGTGGCCTTTTTCACTTCAGAGATCTGATCATGGAAGACAGTCCGTCGCATATCTTCTTGCTGAATTGCGACGTTTGCTCGAGTTTTCCACTCCCGCAAATGCTAGATGCTCACAAAAGATATGGAGGGATGGGAACAATCCTTGTAATCAGAGTTTCTGCTGAGGCAGCTCACCAGTTTGGAGAGTTGGTTGCCGATCCAACGACAAATGAACTACTTCACTATGCGGAAAAACCCGAAACTTTTGTGAGCGATCTTATAAACTGCGGTGTCTACATATTTACACCGGATATATTTTCTGCAATACAAGGCGTTTCCACGCAGCGGAAAGAGAGAGCGAATTTAAGTCGATTATCTAGCTTTGAAGCCCTTCAATCTGCAGCAACAAGGAGCTTGCCGAAAGACTATGTAAGATTGGATCAAGACATCCTATCGCCTTTTGCAGGGAAGAAACAGTTATATACGTATGAAACTATGGACTTCTGGGAACAAATCAAAACGCCTGCAATGTCCTTGAAATGCTCTGGCTTATATCTCCTCCAATACCGGGTCACCTCCCCCGACCTATTGGCAAGTGGAGATGGTACGAAAAACGCTATCATCACTGGGGATGTTTATATTCATCCTTCAGCTAAAGTACATCCAACAGCCAAGATTGGTCCTAATGTCTCAATATCAGCTAATGCTCGAATTGGAGCTGGTTCTAGGCTCATGAGCTGTATCATCCTTGATGATGTTGAAATTCAAGATAATGCAGTTGTCATTCACGCCATTGTTGGGTGGAAATCTTCCATTGGTCGATGGTCTCGTGTACAGGCAAGTCGAGATATGTGCTTTCTTGTTTTGTTTTCGGGTTTTAATTGCTCCATGAAGAAGCTCATAAGTGAAGCGGTCACGGTTGAGGACGAAGTAGTGGTGACAAACAGCATTGTACTCCCAAACAAGACTCTCAACATGAGTGTTCAAGAGGAGATAATTCTATGA 2853 45.53 MAISIPSRQLFIDGEWREPVLKKRIPIVNPATEETIGSIPAATAEDVELAVDAARKALARNKGKDWASASGALRAKYLRAIAAKITERKSELAKLETIDCGKPLEEAAWDIDDVAGCFEYYADLAEGLDAKQKAPVSVPMDTFKSHVLKEPIGVVGLITPWNYPLLMAAWKVAPALAAGCAAILKPSELASVTCLELGEICKDVGLPSGILNILTGFGPEAGAPLASHPHVDKIAFTGSCATGSKIMTAAAQLVKPVTMELGGKSPIVVFDDVDLDKAAEWTIFGCFWTNGQICSATSRLLVHESIADEFLDRLVKWCQNIKISDPLEEGCRLGPVVSAGQYEKVLNFVSTAEREGAKILFGGVRPKHLKKGYFVEPAIVTNVTTSMQLWREEVFGPVLCVKTFSSEDEAIELANDTIYGLGAAVISNDLERCERVTKALQAGIVWVNCSQPCFTQAPWGGNKRSGFGRELGEWGLDNYLTVKQVTEYVSDEPWGWRSFVEQYEEEDPDASAAVLGFRDLGLLRLAMGSAEEKVVAVIMVGGPTKGTRFRPLSLNIPKPLFPLAGQPMVHHPISACKRIPNLAQIFLIGFYEEREFALYLSSISNELKVPIRYLKEQKPHGSAGGLFHFRDLIMEDSPSHIFLLNCDVCSSFPLPQMLDAHKRYGGMGTILVIRVSAEAAHQFGELVADPTTNELLHYAEKPETFVSDLINCGVYIFTPDIFSAIQGVSTQRKERANLSRLSSFEALQSAATRSLPKDYVRLDQDILSPFAGKKQLYTYETMDFWEQIKTPAMSLKCSGLYLLQYRVTSPDLLASGDGTKNAIITGDVYIHPSAKVHPTAKIGPNVSISANARIGAGSRLMSCIILDDVEIQDNAVVIHAIVGWKSSIGRWSRVQASRDMCFLVLFSGFNCSMKKLISEAVTVEDEVVVTNSIVLPNKTLNMSVQEEIIL 950
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 688944 699233 + CmaCh10G001510.1 Cma10g00151 301467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00151 950 SUPERFAMILY Nucleotide-diphospho-sugar transferases 534 884 IPR029044 -
Cma10g00151 950 Pfam Nucleotidyl transferase 536 746 IPR005835 GO:0009058|GO:0016779
Cma10g00151 950 Gene3D Hexapeptide repeat proteins 815 946 - -
Cma10g00151 950 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 24 483 IPR016162 GO:0016491
Cma10g00151 950 SUPERFAMILY ALDH-like 5 488 IPR016161 GO:0016491
Cma10g00151 950 CDD ALDH_F10_BADH 27 487 - -
Cma10g00151 950 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 458 IPR016163 GO:0016620
Cma10g00151 950 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 287 298 IPR016160 GO:0016491
Cma10g00151 950 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1 497 - -
Cma10g00151 950 Pfam Aldehyde dehydrogenase family 16 485 IPR015590 GO:0016491
Cma10g00151 950 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 524 803 IPR029044 -
Cma10g00151 950 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 259 266 IPR029510 GO:0016491
Cma10g00151 950 PANTHER BETAINE ALDEHYDE DEHYDROGENASE 1, CHLOROPLASTIC 1 497 - -
Cma10g00151 950 CDD M1P_guanylylT_A_like_N 536 801 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00151 Cma-Chr10:688944 Cma11g01059 Cma-Chr11:5809956 0 dispersed
Cma15g00110 Cma-Chr15:498294 Cma10g00151 Cma-Chr10:688944 2.51E-53 dispersed
Cma17g00366 Cma-Chr17:2030351 Cma10g00151 Cma-Chr10:688944 5.29E-64 dispersed
Cma10g00151 Cma-Chr10:688944 Cma14g00623 Cma-Chr14:3083658 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00151 K00130 - csv:101213657 941.028