Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00152 ATGGCTAATCTTCTTCTATCGGATTCTTCTTTAAAAGCTTATAGCCGGAAGCAGAAATCCCTCGGTCTGCTCTGCTCCAATTTTTTGAGGTTGTATGATCGAGGTGATGTTCACTCAATCAGCCTCGACAATGCCGCCTCTCGGCTAGGTGTTGAAAGGCGACGGATCTACGACATTGTCAACGTTTTAGAAAGTGTTGGAATTCTTTGTAGAAAGGCCAAGAATCAATATAGTTGGATAGGATTTTCTGGCATTCCAAAGGCACTACGGCACCTTAAGGAAGAAGATATGAAGGGAAATAACTCTCCCATAGCTGCCTATGATCACTCAAGATTGATAGATGAAGATGAAACATGTTCAGATCTCACTTCTGTGAGCCATGAGTCAATCCCTATGATGTCTAAATCTTCAGCCTCAGTGAGATGTGTGGCGTCAGAAAACCGGAGGGAAAAATCTCTTGCACTTCTTACGCAGAATTTTGTCAAGCTCTTTGTCTGTTCTAACGCACATCTGATTTCACTCGATGAAGCTGCAAAATTACTGCTAGGCGATACACAAAGTGAATCCGTAATGAGAAGCAAAATCAGGCGCCTTTACGATATTGCAAATGTGTTAGCTGCAATTCATCTTATTGAAAAGACGCATACCGTTGATACCAGAAAGCCTGCATTCAGGTGGTTAGGATTTAGAGGTAAAGTTGAGAATTGTCGTGCAGGCAAGCCAATTCCATGTGGTTCAAATAAAAGGACTTTTGGAACCGATATAACTAATATCAACTTGAAGAGAAACAAAGTGGTCAATTCATTTGATCTGAATAAGAGCCCCAATTCCCAGAAACATAAGCATGTGCATCTAGAGGGTTGTAGAGTTGAAGTAGATTTGAACCAAAGTGGCAAATTTGAGCGCCATCCAAATTCTAAGAGCTTCATATTTGGACCCTTTTCTCCCATTGCTAGATTGGAAGTTAGAGCTTCTAAAAATGAAGTGAAACGGGTTCGTCATAACTGGGTGAGCCTTGCCTCAACTTATCATCCTCAGTATCAGAACCAAGCTTTAAGAGAATTATTCTCTCATTACAAGGATGCCTGGAAGTTATGGTACTCTGAAACTGTGAACAGATCATCAATACAAATTCCTGAGGCATAA 1146 40.92 MANLLLSDSSLKAYSRKQKSLGLLCSNFLRLYDRGDVHSISLDNAASRLGVERRRIYDIVNVLESVGILCRKAKNQYSWIGFSGIPKALRHLKEEDMKGNNSPIAAYDHSRLIDEDETCSDLTSVSHESIPMMSKSSASVRCVASENRREKSLALLTQNFVKLFVCSNAHLISLDEAAKLLLGDTQSESVMRSKIRRLYDIANVLAAIHLIEKTHTVDTRKPAFRWLGFRGKVENCRAGKPIPCGSNKRTFGTDITNINLKRNKVVNSFDLNKSPNSQKHKHVHLEGCRVEVDLNQSGKFERHPNSKSFIFGPFSPIARLEVRASKNEVKRVRHNWVSLASTYHPQYQNQALRELFSHYKDAWKLWYSETVNRSSIQIPEA 381
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 697829 700780 - CmaCh10G001520.1 Cma10g00152 301468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00152 381 SUPERFAMILY Winged helix DNA-binding domain 150 229 IPR036390 -
Cma10g00152 381 SMART E2F_TDP_2 16 81 IPR003316 GO:0005667|GO:0006355
Cma10g00152 381 SMART E2F_TDP_2 148 228 IPR003316 GO:0005667|GO:0006355
Cma10g00152 381 PANTHER TRANSCRIPTION FACTOR E2F 9 368 IPR015633 GO:0000978|GO:0006357
Cma10g00152 381 PANTHER E2F TRANSCRIPTION FACTOR-LIKE E2FF 9 368 - -
Cma10g00152 381 SUPERFAMILY Winged helix DNA-binding domain 15 80 IPR036390 -
Cma10g00152 381 Pfam E2F/DP family winged-helix DNA-binding domain 150 228 IPR003316 GO:0005667|GO:0006355
Cma10g00152 381 Pfam E2F/DP family winged-helix DNA-binding domain 17 81 IPR003316 GO:0005667|GO:0006355
Cma10g00152 381 Gene3D - 11 83 IPR036388 -
Cma10g00152 381 Gene3D - 143 230 IPR036388 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00152 Cma18g00144 CCT
Cma10g00152 Cma13g00908 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00152 Cma-Chr10:697829 Cma20g00153 Cma-Chr20:751925 1.69E-10 dispersed
Cma10g00152 Cma-Chr10:697829 Cma13g00908 Cma-Chr13:7271261 1.13E-72 wgd
Cma10g00152 Cma-Chr10:697829 Cma18g00144 Cma-Chr18:726434 1.46E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35683 PF02319 E2F_TDP 7.90E-20 CL0123 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00152 K09391 - csv:101210753 538.88