Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00154 ATGACCCCATCTCTCCTCTTCCTCATCAAACCCCTTTTCTCTTCTCTCTCTTCTCCGGCCATGGCGGCGGATCCCGGCCAACTTGTTGGGGTTTCTGATGGTGATTCGAAACAGAGTGGTTTGGCCCAGATTCATGTTCTTGCTGTTGATGATAGCCTCGTCGATCGGAAGGTTATTGAGCGGTTGCTGAAGATCTCGTCTTGTAAAGTGACTGCTGTTGAGAGTGGGAGAAGTGCTCTTCAATATCTGGGTTTGGATGGGGAAACCAATTCTGTCCGGTTTAGTGATTTGAAGGTGAATCTCATCATCACAGATTATTCCATGCCTGAAATGAATGGATATGAACTGCTGAAGAAGATCAAGGAATCATCGGCTCTCCGGGAGATTCCTGTTGTGATAATGTCATCAGAGAATATTATGGGTCGAATAGAGAATTGCTTGAAGGAAGGGGCTGAAGAGTTCATAGTGAAGCCTGTGAAATTGTCTGATGTGAAACGACTGAAAGACTACTTCATTATGGATGGAGAAAATGGAGGGAAGGAGATTAGTCATAAGAGGAAGCTTCGTCTTGATGATCATGATCATGATCACCACTTCTTGACTCCTGGGTCTCCGCCGCCGCCGCCGCCGATGGTGGGTTTCGACCATTGCCAAGGGTATCTGCAACGAATCACATGTTCGTCAAAGAAACCAAGGTTCCTCAATGGCGACCAGTTCACGTAA 723 46.75 MTPSLLFLIKPLFSSLSSPAMAADPGQLVGVSDGDSKQSGLAQIHVLAVDDSLVDRKVIERLLKISSCKVTAVESGRSALQYLGLDGETNSVRFSDLKVNLIITDYSMPEMNGYELLKKIKESSALREIPVVIMSSENIMGRIENCLKEGAEEFIVKPVKLSDVKRLKDYFIMDGENGGKEISHKRKLRLDDHDHDHHFLTPGSPPPPPPMVGFDHCQGYLQRITCSSKKPRFLNGDQFT 240
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 701443 703073 + CmaCh10G001540.1 Cma10g00154 301470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00154 240 CDD REC_typeA_ARR 46 167 - -
Cma10g00154 240 Gene3D - 44 192 - -
Cma10g00154 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED 35 190 - -
Cma10g00154 240 PANTHER TWO-COMPONENT RESPONSE REGULATOR 35 190 IPR045279 GO:0009736
Cma10g00154 240 ProSiteProfiles Response regulatory domain profile. 45 172 IPR001789 GO:0000160
Cma10g00154 240 SUPERFAMILY CheY-like 44 166 IPR011006 -
Cma10g00154 240 Pfam Response regulator receiver domain 46 164 IPR001789 GO:0000160
Cma10g00154 240 SMART REC_2 44 171 IPR001789 GO:0000160
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00304 Cma-Chr4:1510000 Cma10g00154 Cma-Chr10:701443 2.16E-68 dispersed
Cma10g00154 Cma-Chr10:701443 Cma07g01364 Cma-Chr7:7780371 4.05E-48 dispersed
Cma10g00154 Cma-Chr10:701443 Cma04g01600 Cma-Chr4:8080872 1.07E-64 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35684 PF00072 Response_reg 1.70E-21 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00154 K14492 - csv:101214143 273.478