Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00155 ATGGTTCACTCGAGGCTGGAGGACGCCACTGGTTTAAAGGAAGAGCTCATCGGAAACGCCTGGTCGGCCGCCGTTAAAGCTCACAAGCATGCTGATAAGCCCTTTCTCCTTGATAAAACCCGAGATTTCTCCATCATCAGCTTCGCTGGATCTTGGTCACCGGAAGCCTGGTTCTCTTCTTCCGATTCATCCTTCGGGGAGACAAAGATCAACCGTCAGCTGTTCCCCTCCGTCAGGAGCATCGGGCTCGATGAATACGCCGAGGTCAATTCCGCATTTTTCCGGCGATTTGAGGCCATTTTGGGGAAGCTCAAGGAGGTTCTCAAAGCGAACAAGCCTGTAGCGTTTACCGGCCACTCAGCCGGAGGTCCGGTAGCCATTCTTGCAACCATTTGGCTGTTGGAACAGCAAAGAAACTCAAACACAAACACCAATTTCACTCCTCCAAAATGCATCACATTTGGATCTCCTCTTGTGGGTAACTTCATTTTCTCCCATGCTCTCAAAAGGGAGAAATGGTCCATCCATTTTGTACACTTCGTCACGAGATACGACATCGTTCCACGAATCCATCTAGCTCCTCTACCTTCCTTGCAACCACATCTGCAAACCATCCTCACCTCCTTGAACTCACGATCACTCGGGTCAGCGTCGAATGGGAATGTTGCTACTGAATTCTTCATGACGGTGATGAGGAATGCGTCGGCTGTGGCAAGCAATGCTGCCTGCCATCTTATGGGAAACACTAACCTTTTGCTAGACACTTTGAAAAGCTTTGTCAAATTGAGTCCTTATAGCCCTTTTGGCACTTACATTTTCTTTACTGACAGTGAGAAAGTGGTGGTGGTGACCAACCCAGATGCTGTTTTACAAATACTATTCTTCGCTTGTCAGTTGAGCTCTGAGAGCGAATGTGATAACATCGCTCATCAGAGTTTGAAGGCCCATTGGGAGTATGAATCTAAAATGCGACAGAACTTGGAGCTCCTGCACGCTATTCGTCTAGATGAATTGTATAAGCTCCCGTTGTCCTTAACAGGCAGAAACACACCGATAACACAAGCTTTGAATGAACTTGGCCTAAGTTCGAGAGCTTTATTGAATCTTCGAGCAGCTGGCTCATACGAAGAGCAGAAAATCAGGAATCAAGAAAGGATGAGTCTAAAGAAACAAGATATCGAGAAACTATTGAATTGGCTAGAAGAAAATTACAGAGATGTATGTAAGGTTGACGGTTTGGGATATTATGATGCATTTAAACTCCAGAAGGATCCGAAGGACTTCCAAGCTAATATCAAGAGGCTTGAGCAAGCAGGTATATGGGACGAGATCGTAGAAATGCTCAAAAGATACGAGCTCCCGGATGAATTTGAGGGCCAGGACGAATGGATACAAATCGGAACCCGGTTTCGCTGTCTCTATGAGCCTCTAGATATTGCTAACTACTATAGACACTCCAAGAATGATGATACTGGTCCTTATATGATAAAAGGAAGGCCGAAACGTTACAGATTTACACAAAGATGGCTCGAACATAATCAAAAGATGACGGAGCCGAGTGAAGTATCGACTCTTTGGGCAGAGGTAGAGGAGCTTCGTATCCAAACCAGAACCAAATTGTACGCTGAATGTTCAAGAGAAATCTTAGAGTTGGAGAAGAAGATGAAGAGATGGGTCAATGAGATTGAAAATGATATGTTGTTAAAGAAATCTACTTTCACGGAATGGTGGAAGACACTTCCTGAGCATCATAGATCACAGTCTTGTATTAGGGACGATATCGAGAGGATGGCGAATACCGAGGATGCTACTAACACGATGTAG 1824 45.23 MVHSRLEDATGLKEELIGNAWSAAVKAHKHADKPFLLDKTRDFSIISFAGSWSPEAWFSSSDSSFGETKINRQLFPSVRSIGLDEYAEVNSAFFRRFEAILGKLKEVLKANKPVAFTGHSAGGPVAILATIWLLEQQRNSNTNTNFTPPKCITFGSPLVGNFIFSHALKREKWSIHFVHFVTRYDIVPRIHLAPLPSLQPHLQTILTSLNSRSLGSASNGNVATEFFMTVMRNASAVASNAACHLMGNTNLLLDTLKSFVKLSPYSPFGTYIFFTDSEKVVVVTNPDAVLQILFFACQLSSESECDNIAHQSLKAHWEYESKMRQNLELLHAIRLDELYKLPLSLTGRNTPITQALNELGLSSRALLNLRAAGSYEEQKIRNQERMSLKKQDIEKLLNWLEENYRDVCKVDGLGYYDAFKLQKDPKDFQANIKRLEQAGIWDEIVEMLKRYELPDEFEGQDEWIQIGTRFRCLYEPLDIANYYRHSKNDDTGPYMIKGRPKRYRFTQRWLEHNQKMTEPSEVSTLWAEVEELRIQTRTKLYAECSREILELEKKMKRWVNEIENDMLLKKSTFTEWWKTLPEHHRSQSCIRDDIERMANTEDATNTM 607
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 703089 705424 + CmaCh10G001550.1 Cma10g00155 301471

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00155 607 SUPERFAMILY alpha/beta-Hydrolases 37 198 IPR029058 -
Cma10g00155 607 Pfam Lipase (class 3) 45 191 IPR002921 GO:0006629
Cma10g00155 607 Gene3D alpha/beta hydrolase 23 328 IPR029058 -
Cma10g00155 607 Pfam Enhanced disease susceptibility 1 protein EP domain 402 591 IPR041266 -
Cma10g00155 607 PANTHER PROTEIN EDS1-RELATED 1 594 IPR044214 GO:0006952
Cma10g00155 607 PANTHER PROTEIN EDS1-RELATED 1 594 - -
Cma10g00155 607 Coils Coil 541 561 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00155 K18875 EDS1; enhanced disease susceptibility 1 protein - csv:101214385 1016.53
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma07g01274 Cma-Chr7:7118368 Cma10g00155 Cma-Chr10:703089 1.36E-42 dispersed
Cma10g00155 Cma-Chr10:703089 Cma14g00630 Cma-Chr14:3115736 4.01E-08 dispersed
Cma10g00155 Cma-Chr10:703089 Cma11g00185 Cma-Chr11:950790 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g677 Blo04g00750 . Bda06g00573 . . . . . . . Cma10g00155 . Car10g00146 Car11g00117 Sed08g1374 . . Bhi02g00383 Tan09g2193 Cmetu04g3167 . Hepe09g0163 . . . . . . . . . . . . . . . . . . Blo15g00283 . Bda14g00829 Bpe07g00815 Bpe15g00622 Bma03g00803 . . Cmo10g00166 Cmo11g00124 . . . . . Cpe18g00822 . . . . . . . . . . . . . . . Csa01g00187 Chy02g02546 Cme02g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004701 1 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 2 1 1 1 1 1 2 2 6 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00155 Cma_Chr10 FPKM 14.412676 16.555552 8.286076 7.593873 46.557476 49.180973 46.289322 10.0037 10.115481 9.122147