Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00157 ATGGCTCTCTCTGCCTCTGCGCCGCAGAGCCTGAAGCTTCGGATTCTCTCGTGCCTCACCAAGCTCTCCGACCGAGATACCTACTCCCTTGCTGCATCCGACCTTGAATCTATTGCTCAGAGTCTTGACGCGAATTCCTTACCGGTTTTCCTTTCATGTATATACTCCACTGATGCTTCGGATAAATCGCTGGTGAGGAAGCAATGCATTCGCCTCTTTGCTGTTCTGTCAGAGACTCATGGAAATTCTCTTTCTCCATACCTCTCGAAGATTCTCTCCAATATCACACGCCGGTTCCGCGATCCTGATTCGTCGGTCCGATCCGCGTGTGTTAACTCTGTAGCGACATTAGCTTCCAGTGTTACCAAATCGCCGTTTTCGACGTTTTTGAAGCCTTTAACTGATTCGCTTTTCACGGAGCAAGATTCTAATTCGCAGATCGGAGCGGCTCTGTGTTTGGCTTCGGCAATTGATTCTGCACCGGATCCGGATCCGGTTAAGCTCGGCAAGCTTTTGCCGAGGTTCGAGAAGCTTTTGAAATGCGATAGTTTCAAAGCAAAGTCGGCTCTCTTGACATTGATCGGGAGTGTTATTGGAGTTGATGGAGCTTTCGGTAATGGAGCTCTGAAAATTTTTGTCCCGTGCTTGGTTGCATTCCTTAGCAGTGAGGATTGGGCGGCGAGAAAATCTGCTGCGGAGGCGCTCGGTAAGCTAGCAGTCTTGGAGAGGGATGCTCTGGCGGAGTTCAAGGCTGGTTGCTTGAAAACGTTCGAGAGTAGGCGATTCGATAAGGTTAAGGCTGTACGGGAGGTAATGAATCAGATGCTCGAGGCATGGAAGCAGATTCCTGATCTCTCGGATGAGGCGTCTGCGCCAGCTTATTCCCAAGCTTCCTCGAAAGAAATCGCAAGTGATGGACGTTATCCACCTGGATCCAAGAATAATTCTTCTGCTCGTCTTGACTCTCCTACCCCGAGGAAGAACGCCGGTCCAGTTTGTAGGTCTACACCGCCGGATGCCTCACCTGCGATGACAGCGAGAAGGAGAAGCCCTTTGAGTGCTGGTGACAAGAAAGCAAGTTTGTCAATGCTCCAAAAGGTTGAGCGTAAAAAGCGTCTGGACTGGAAAGTAGAAGTCTCTGCTAGGAAATCTCCCTCAGGAGAACTGAAGGAAAGAGATGAAAACATTCCGGATAGAAGGATTAGTGAAAACACCAAGATTACGAAACCAGAAACAAGACGGGCACTCTTCAATAAGATTTCTGACGATAATATGATTAAATTCGGTGGGCTCAGGTCTGGATCTCGCGTAGTTCCTTGTCCAGATGAGGGCCATGAGTCGACTGTTGTAACAAGTAATGCAACCGACGATCTGCACAGGAACCACAAAGACTCCGAAGAATTGCATTTGATCCGTAACCAGCTTAATCAAATAGAAAAGCAGCAATCCAGTCTTCTAGATATCCTCCAGAACTTCATTGGGAGTTCACAAAACGGAATGCGATCCTTGGAGACGCGTGTGCATGGTCTGGAACGGGCCTTGGATGAGATCTCATATGATCTGGCTGTATCAAGTGGAAGGATGTCTTATGCTAACACCCCCACAACTACATGTTGCCTGCTACCCGGAGCTGATTTTTTGAGCTCAAGGTTCTGGAAAAGAGCAGAGGGCAGACAGTCATCGTCAAAGTTCTCAACTCCCATTGGTGCAACTCCATTGGCTCCAATGCGCAGCAGATCAGGTGATCGCCATGGAGCTAATGTGGATGCTGGATTTATGACTCCAGAGAACCATAGGTTTCAGGTCCAGCGAAGGGGTGGCTTTATGGTGAATCCATTGGCTTTGAGACAAGGTGAACCCAGGGTTGTCTCAAATGCGGCACTTCCTTGA 1890 48.78 MALSASAPQSLKLRILSCLTKLSDRDTYSLAASDLESIAQSLDANSLPVFLSCIYSTDASDKSLVRKQCIRLFAVLSETHGNSLSPYLSKILSNITRRFRDPDSSVRSACVNSVATLASSVTKSPFSTFLKPLTDSLFTEQDSNSQIGAALCLASAIDSAPDPDPVKLGKLLPRFEKLLKCDSFKAKSALLTLIGSVIGVDGAFGNGALKIFVPCLVAFLSSEDWAARKSAAEALGKLAVLERDALAEFKAGCLKTFESRRFDKVKAVREVMNQMLEAWKQIPDLSDEASAPAYSQASSKEIASDGRYPPGSKNNSSARLDSPTPRKNAGPVCRSTPPDASPAMTARRRSPLSAGDKKASLSMLQKVERKKRLDWKVEVSARKSPSGELKERDENIPDRRISENTKITKPETRRALFNKISDDNMIKFGGLRSGSRVVPCPDEGHESTVVTSNATDDLHRNHKDSEELHLIRNQLNQIEKQQSSLLDILQNFIGSSQNGMRSLETRVHGLERALDEISYDLAVSSGRMSYANTPTTTCCLLPGADFLSSRFWKRAEGRQSSSKFSTPIGATPLAPMRSRSGDRHGANVDAGFMTPENHRFQVQRRGGFMVNPLALRQGEPRVVSNAALP 629
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 711917 715781 + CmaCh10G001570.1 Cma10g00157 301473

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00157 629 Coils Coil 461 481 - -
Cma10g00157 629 Gene3D - 3 369 IPR011989 -
Cma10g00157 629 SUPERFAMILY ARM repeat 11 278 IPR016024 -
Cma10g00157 629 Pfam HEAT repeat 212 239 IPR000357 GO:0005515
Cma10g00157 629 MobiDBLite consensus disorder prediction 309 323 - -
Cma10g00157 629 MobiDBLite consensus disorder prediction 290 360 - -
Cma10g00157 629 PANTHER MICROTUBULE-ASSOCIATED PROTEIN TORTIFOLIA1 8 626 IPR033337 GO:0005874|GO:0008017
Cma10g00157 629 PANTHER TORTIFOLIA1-LIKE PROTEIN 3 8 626 - -
Cma10g00157 629 MobiDBLite consensus disorder prediction 562 584 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00157 - - - csv:101211494 1077.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g00245 Cma-Chr3:3534370 Cma10g00157 Cma-Chr10:711917 1.69E-08 dispersed
Cma05g00953 Cma-Chr5:7703631 Cma10g00157 Cma-Chr10:711917 4.45E-180 dispersed
Cma10g00157 Cma-Chr10:711917 Cma12g00708 Cma-Chr12:3912688 0 dispersed
Cma10g00157 Cma-Chr10:711917 Cma11g00182 Cma-Chr11:943982 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g669 . . . . . . . . . . Cma10g00157 . . Car11g00119 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cmo10g00169 Cmo11g00126 . . . . . . . . . . . . . . . . . . . . . Csa01g00189 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005976 1 1 1 1 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00157 Cma_Chr10 FPKM 7.58704 9.153551 4.415164 4.649639 17.918346 15.404567 17.434502 2.44765 2.024282 2.192209