Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00160 ATGCGAAGCACTGCTGCCGCCGTCAACGAATCCCCCGCTGCCGAGACCTGTGGCGGCGGTCCTGGTGAGATCATGCTGTTTGGTGTCAGAGTAGTGGTGGATTCGATGAGGAAGAGCGTGAGTTTGAACAATCTGTCGCAGTACGAGCAACCTCATGAAGCCGCCGATGTAATCACTAACGACAGCAAGAACGACCTCGTTTCCGTCAATAACAAAGATGATGTTGCCGCTGGTTATGCCTCTGCAGATGATGCTGTTCCCAACGCCCGGGGGAACCGCGAGCGTGAGCGCAAGCGAGGCGTGCCTTGGACTGAGGAAGAGCACAAACTATTTTTGGTTGGACTGCAACAAGTAGGGAAGGGGGATTGGAGAGGAATTTCTAGGAACTTTGTGAAGACTCGCACCCCAACTCAGGTCGCTAGCCACGCTCAGAAATACTTTCTTCGCCGGAGCAATCTAAATCGCCGTCGCCGTAGATCTAGTCTTTTCGATATCACGACGGACACGGTCACGGCAGCTCCAATGGTTGAAGAGCCAGCGCAGCGTCAAGAAATTGCCTCTCAATCCCATTCCTTTATTCCATCACCCCCACCTGAAATTTCTAAGCACAATGTAATTCCAGTAGAGCAAAATTTGCCATTTTCGTTTGGACCAGCACCATTAGCCACCACTCTAACCAAGAATCTGATGGAAAAGTGTGGTCCTGGAGAAGTGAACACAGAAAGTGATGGATCACTGAAGCTGGGCCTCAAGGATTCCATCTTTCCCTCTAATCAAAATCCAAACTCAACTGGTTTGAACTTGAATTCAAACTCAGCAATGGAGTCATCAGCTTTGTCTCTTCGCCTTTCCTTAACATCTGACCAGAGAGAGGCTTCATCAAGACACTCAACTTTCCAGGCCATGCCAAGTTTCAATAATGGTGAGGGCATCATAAGTGCAGCCTAA 948 49.58 MRSTAAAVNESPAAETCGGGPGEIMLFGVRVVVDSMRKSVSLNNLSQYEQPHEAADVITNDSKNDLVSVNNKDDVAAGYASADDAVPNARGNRERERKRGVPWTEEEHKLFLVGLQQVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRSNLNRRRRRSSLFDITTDTVTAAPMVEEPAQRQEIASQSHSFIPSPPPEISKHNVIPVEQNLPFSFGPAPLATTLTKNLMEKCGPGEVNTESDGSLKLGLKDSIFPSNQNPNSTGLNLNSNSAMESSALSLRLSLTSDQREASSRHSTFQAMPSFNNGEGIISAA 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 725322 728051 + CmaCh10G001600.1 Cma10g00160 301476

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00160 315 MobiDBLite consensus disorder prediction 252 270 - -
Cma10g00160 315 MobiDBLite consensus disorder prediction 284 304 - -
Cma10g00160 315 ProSiteProfiles Myb-like domain profile. 95 147 IPR001005 -
Cma10g00160 315 SUPERFAMILY Homeodomain-like 97 152 IPR009057 -
Cma10g00160 315 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 95 151 IPR017930 -
Cma10g00160 315 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 16 315 - -
Cma10g00160 315 CDD SANT 102 147 IPR001005 -
Cma10g00160 315 SMART sant 99 149 IPR001005 -
Cma10g00160 315 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 98 149 IPR006447 GO:0003677
Cma10g00160 315 PANTHER KIN2 16 315 - -
Cma10g00160 315 ProSiteProfiles SANT domain profile. 98 151 IPR017884 -
Cma10g00160 315 MobiDBLite consensus disorder prediction 235 270 - -
Cma10g00160 315 Pfam Myb-like DNA-binding domain 102 147 IPR001005 -
Cma10g00160 315 Gene3D - 101 153 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00160 - - - csv:101214626 486.493
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00160 Cma-Chr10:725322 Cma06g00797 Cma-Chr6:4182489 1.30E-48 dispersed
Cma10g00160 Cma-Chr10:725322 Cma11g00180 Cma-Chr11:935372 6.60E-159 wgd
Cma10g00160 Cma-Chr10:725322 Cma13g00914 Cma-Chr13:7306049 1.60E-70 wgd
Cma10g00160 Cma-Chr10:725322 Cma18g00141 Cma-Chr18:708562 2.70E-78 wgd
Cma10g00160 Cma-Chr10:725322 Cma04g01608 Cma-Chr4:8119664 7.18E-47 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g621 . . . . . . Bma06g00128 Bma12g00977 . . Cma10g00160 . Car10g00202 . . . . Bhi02g00275 . . . . . . . . . . . . . . . . . . . . . . Blo15g00326 . . Bpe07g00767 . . . . . . . . . . . Cpe18g00774 . . . . . . . . . . . . . . . . Chy02g02461 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005075 1 1 2 0 2 1 3 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 3 1 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35685 PF00249 Myb_DNA-binding 2.60E-11 CL0123 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma10g00160 Cma_Chr10 FPKM 104.597847 118.163506 81.595688 80.914497 16.680918 16.322514 15.749035 158.177505 163.202438 156.023438