Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma10g00164 ATGGATCTTCCACTTGTTAACGAATCATCCTTCTCCGCTGCGAATCCTTCTGCTTACAGCTTAGCCGCGATTTGGCCTTTCGGGGGGGAGCAGGGCGGGAACGCATTGGGTCTCCGAATGGCTAGTTTGAGTCAGAATCTTGGTGGGTTTCCCGAGAGCTCCACGAATCGGGACGGATCAATGGAGGAATCGACTGTGACGGAGCAGAGTGGCGGTGGGAGAAAGAGGAAGGATGTGAGCTCCGAGGATGAATCTTCGAGAATGGTTTCCACTAGTAGTGCTAATCAATTGAGTAACTCAAATGGTAAACGGACGAAAGTGGTGGCATCCAGAGATGAAGGTGGTGGTATAAAAGCTGAAGTAGAACCTAGCTCGGCAGATGGTAAGAAGCTGGCCGAGCAAAGCCGGAAACCCGAACCACCAAAAGATTACATCCATGTCAGAGCGAGAAGGGGCCAAGCTACTGATAGCCATAGTTTAGCAGAAAGAGCGAGAAGAGAGAAGATCAGTGAGAGAATGAAAATTTTGCAGGACTTGGTTCCCGGTTGTAACAAGGTTATTGGAAAAGCACTTGTTCTTGATGAGATAATAAATTATGTCCAATCACTGCAACGTCAAGTCGAGTTACTCTCCATGAAGCTTGAAGCTGTGAATTCCAGAATGAACTTAAGCCCAGCCATAGAAGGTTTTACCGCAAAAAATATGGTTAATCAACCATATGATACAGTTGGAATATTATATGGTTCACAAGCGGCAAGAGACTATACCCAAGGTGCGCAACCAGAATGGTTGCATATGCAGATCAGTGGAAGCTTTGAAAGAACATCTTAG 831 46.33 MDLPLVNESSFSAANPSAYSLAAIWPFGGEQGGNALGLRMASLSQNLGGFPESSTNRDGSMEESTVTEQSGGGRKRKDVSSEDESSRMVSTSSANQLSNSNGKRTKVVASRDEGGGIKAEVEPSSADGKKLAEQSRKPEPPKDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKVIGKALVLDEIINYVQSLQRQVELLSMKLEAVNSRMNLSPAIEGFTAKNMVNQPYDTVGILYGSQAARDYTQGAQPEWLHMQISGSFERTS 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 753260 755788 - CmaCh10G001640.1 Cma10g00164 301480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma10g00164 276 MobiDBLite consensus disorder prediction 106 165 - -
Cma10g00164 276 MobiDBLite consensus disorder prediction 47 68 - -
Cma10g00164 276 PANTHER MYC-TYPE, BASIC HELIX-LOOP-HELIX (BHLH) DOMAIN-CONTAINING PROTEIN-RELATED 1 275 - -
Cma10g00164 276 MobiDBLite consensus disorder prediction 69 84 - -
Cma10g00164 276 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 203 IPR011598 GO:0046983
Cma10g00164 276 Gene3D - 150 225 IPR036638 GO:0046983
Cma10g00164 276 Coils Coil 200 220 - -
Cma10g00164 276 MobiDBLite consensus disorder prediction 85 105 - -
Cma10g00164 276 SMART finulus 159 209 IPR011598 GO:0046983
Cma10g00164 276 CDD bHLH_AtBPE_like 143 225 - -
Cma10g00164 276 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 1 275 IPR024097 GO:0006355
Cma10g00164 276 MobiDBLite consensus disorder prediction 47 165 - -
Cma10g00164 276 Pfam Helix-loop-helix DNA-binding domain 157 204 IPR011598 GO:0046983
Cma10g00164 276 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 222 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma10g00164 Cma11g00175 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma10g00164 Cma-Chr10:753260 Cma12g00704 Cma-Chr12:3874970 3.81E-88 dispersed
Cma10g00164 Cma-Chr10:753260 Cma11g00175 Cma-Chr11:906624 8.30E-178 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
35686 PF00010 HLH 2.40E-07 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma10g00164 - - csv:101215588 488.804